Hi there 👋

• 📫 email me at: zhang_tianyi@bii.a-star.edu.sg or zhangtianyi@buaa.edu.cn

• 🔭 I’m currently working on Computational Pathology, with:

CVPD group at Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore

Beijing Advanced Innovation Center for Biomedical Engineering, School of Biological Science and Medical Engineering, Beihang University, China

• 😄 Reviewer duties: IEEE JBHI
• 🌱 To view videos I made about my research and the courses: https://space.bilibili.com/64952151?spm_id_from=333.1007.0.0

Published Works:

Tianyi Zhang, Yunlu Feng, Yu Zhao, Guangda Fan, Aiming Yang, Shangqing Lyu, Peng Zhang, Fan Song, Chenbin Ma, Yangyang Sun, Youdan Feng, and Guanglei Zhang, “MSHT: Multi-stage hybrid transformer for the ROSE image analysis of pancreatic cancer,” IEEE Journal of Biomedical and Health Informatics, 2023, 27(4), pp.1946 - 1957. (SCI, Q1, IF=7.1)

Tianyi Zhang, Youdan Feng, Yu Zhao, Yunlu Feng, Yanli Lei, Nan Ying, Fan Song, Zhiling Yan, Yufang He, Aiming Yang, and Guanglei Zhang, “SI-ViT: Shuffle instance-based Vision Transformer for pancreatic cancer ROSE image classification” Computer Methods and Programs in Biomedicine, 244, p. 107969. (SCI, Q1, IF=6.1)

Tianyi Zhang, Zhiling Yan, Chunhui li, Nan Ying, Yanli Lei, Shangqing Lyu, Yunlu Feng, Yu Zhao, Guanglei Zhang, “CellMix: A general instance relationship based method for data augmentation towards pathology image analysis,” arXiv:2301.11513, 2023. (under-review)

Tianyi Zhang, Shangqing Lyu, Yanli Lei, Sicheng Chen, Nan Ying, Yufang He, Yu Zhao, Yunlu Feng, Guanglei Zhang, “PuzzleTuning: explicit bridge pathological and natural image with puzzles” arXiv: 2311.06712, 2023. (under-review)

Zeyu Liu*, Tianyi Zhang*, Yufang He, Yunlu Feng, Yu Zhao, and Guanglei Zhang, “Generating Progressive Images from Pathological Transitions via Diffusion Model” arXiv: 2311.12316 (MICCAI2024 accepted)

Nan Ying*, Yanli Lei*, Tianyi Zhang*, Shangqing Lyu, Chunhui Li, Sicheng Chen, Zheyu Liu, and Guanglei Zhang, “CPIA Dataset: A Comprehensive Pathological Image Analysis Dataset for Self-supervised Learning Pre-training”, arxiv 2310.17902 (under-review)

Peng Zhang, Chenbin Ma, Fan Song, Tianyi Zhang, Yangyang Sun, Youdan Feng, Yufang He, Fei Liu, Daifa Wang, Guanglei Zhang, “D2-RecST: Dual-domain Joint Reconstruction Strategy for Fluorescence Molecular Tomography Based on Image Domain and Perception Domain,” Computer Methods and Programs in Biomedicine., 229 (2023): 107293. (SCI, Q1, IF=6.1)

Peng Zhang, Chenbin Ma, Fan Song, Yangyang Sun, Youdan Feng, Yufang He, Tianyi Zhang, Guanglei Zhang, “D2AFNet: A Dual-Domain Attention-Guided Network for Accurate and Interpretable Atrial Fibrillation Detection,” Biomedical Signal Processing and Control., Volume 82, April 2023, 104615.

Chenbin Ma, Peng Zhang, Fan Song, Yangyang Sun, Guangda Fan, Tianyi Zhang, Youdan Feng, Guanglei Zhang, “KD-Informer: cuff-less continuous blood pressure waveform estimation approach based on single photoplethysmography,” IEEE Journal of Biomedical and Health Informatics., 2023, 27(5), pp.2219 - 2230. (SCI, Q1, IF=7.1)

Jinkai Li, Fan Song, Peng Zhang, Chenbin Ma, Tianyi Zhang, Yangyang Sun, Youdan Feng, Xiao Song, Shangqing Lyu, Guanglei Zhang, “A multi-classification model for non-small cell lung cancer subtypes based on independent subtask learning,” Medical Physics, 49(11), pp.6960-6974. (SCI, Q1, IF=4.071)

Fan Song, Lan Song, Tongtong Xing, Youdan Feng, Xiao Song, Peng Zhang, Tianyi Zhang, Zhenchen Zhu, Wei Song, Guanglei Zhang, “A multi-classification model for predicting the invasiveness of lung adenocarcinoma presenting as pure ground-glass nodules,” Frontiers in Oncology, 2022, 12, p.800811. (SCI, Q2, IF=6.244)

Fan Song, Jiaxin Tian, Peng Zhang, Chenbin Ma, Yangyang Sun, Youdan Feng, Tianyi Zhang, Yanli Lei, Yufang He, Zhongyu Cai, Yuanzhi Cheng, Guanglei Zhang, “A Novel Feature Engineering Method Based on Latent Representation Learning for Radiomics: Application in NSCLC Subtype Classification” IEEE Journal of Biomedical and Health Informatics, 2024, 28(1), pp.31 - 41. (SCI, Q1, IF=7.1)

Youdan Feng, Fan Song, Peng Zhang, Guangda Fan, Tianyi Zhang, Xiangyu Zhao, Chenbin Ma, Yangyang Sun, Xiao Song, Huangsheng Pu, Fei Liu, Guanglei Zhang, “Prediction of EGFR mutation status in non-small cell lung cancer based on ensemble learning,” Frontiers in Pharmacology, 2022, 13, p.897597. (SCI, Q1, IF=5.810)

Yufang He, Fan Song, Wangjiang Wu, Suqing Tian, Tianyi Zhang, Shuming Zhang, Peng Zhang, Chenbin Ma, Youdan Feng, Ruijie Yang, Guanglei Zhang, “MultiTrans: Multi-scale feature fusion Transformer with transfer learning strategy for multiple organs segmentation of head and neck CT images” Medicine in Novel Technology and Devices, 2023, 18, p.100235.

Yufang He, Zeyu Liu, Mingxin Qi, Shengwei Ding, Peng Zhang, Fan Song, Chenbin Ma, Huijie Wu, Ruxin Cai, Youdan Feng, Haonan Zhang, Tianyi Zhang, Guanglei Zhang, “PST-Diff: Achieving High-consistency Stain Transfer by Diffusion Models with Pathological and Structural Constraints,” IEEE Transactions on Medical Imaging, 2024, (in-press).