Need the same HDF5 version as Modeller.

.travis.yml

@@ -6,11 +6,18 @@ python:
 install:
   - wget -q $LICENSE_URL -O mod-license >& /dev/null
   - sudo apt-get -qq update
-  - sudo apt-get install -y libhdf5-serial-dev swig
+  - sudo apt-get install -y swig
   - wget http://salilab.org/modeller/9.17/modeller_9.17-1_amd64.deb
   - KEY_MODELLER=`cat mod-license` sudo dpkg -i modeller_9.17-1_amd64.deb
   - ln -sf /usr/lib/python$TRAVIS_PYTHON_VERSION/dist-packages/_modeller.so $(dirname $(which python))/../lib/*/site-packages/
   - ln -sf /usr/lib/python$TRAVIS_PYTHON_VERSION/dist-packages/modeller $(dirname $(which python))/../lib/*/site-packages/
+  - wget http://salilab.org/modeller/downloads/hdf5-1.8.16-headers-64bit-ubuntu.tar.gz
+  - tar -xzf hdf5-1.8.16-headers-64bit-ubuntu.tar.gz && mv hdf5-1.8.16-headers-64bit-ubuntu hdf5-inc
+  - export CMAKE_INCLUDE_PATH=`pwd`/hdf5-inc
+  - mkdir hdf5-libs
+  - ln -sf /usr/lib/modeller9.17/lib/x86_64-intel8/libhdf5_hl.so.10 hdf5-libs/libhdf5_hl.so
+  - ln -sf /usr/lib/modeller9.17/lib/x86_64-intel8/libhdf5.so.10 hdf5-libs/libhdf5.so
+  - export CMAKE_LIBRARY_PATH=`pwd`/hdf5-libs
 script:
   - mkdir build
   - cd build