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Fix docs; ported from trunk, r1062, r1063.
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benmwebb committed May 19, 2015
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Expand Up @@ -19,12 +19,11 @@ any regular Python script with a command similar to::

python foo.py

In the Sali lab, MDT is built as part of the nightly build system, and is
installed with MODELLER in `/salilab/diva1/home/modeller`. Thus, you can
run an MDT script :file:`foo.py` just like any regular Python script with
a command similar to::
In the Sali lab, MDT is built as part of the nightly build system at the
same time as MODELLER. Thus you can set up your system to run MDT scripts
by running::

/salilab/diva1/home/modeller/modpy.sh python foo.py
module load modeller

.. _compilation:

Expand All @@ -40,7 +39,7 @@ Unpack the source code and change into the newly-created MDT subdirectory.
Install dependent packages needed for MDT: MODELLER, glib, SWIG,
pkg-config, and HDF5:

* MODELLER 9.9 or later is required.
* MODELLER 9.13 or later is required.
* glib 2.4 or later is required. It is available as pre-built packages for most
modern Linux distributions; there is also a MacPorts package for Mac users.
* SWIG 1.3.39 or later is required.
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