Add basic Debian packaging

tools/debian/changelog

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+rmf (1.6.0-1~@CODENAME@) @CODENAME@; urgency=low
+
+  * Initial .deb release
+
+ -- IMP Developers <imp@salilab.org>  Thu, 07 Mar 2024 14:52:50 -0800

tools/debian/control

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+Source: rmf
+Priority: optional
+Maintainer: Ben Webb <ben@salilab.org>
+Build-Depends: debhelper-compat (= 13), cmake, swig, libboost-filesystem-dev, libboost-iostreams-dev, libboost-program-options-dev, libboost-thread-dev, libhdf5-dev, python3-dev, python3-numpy
+Standards-Version: 4.6.2
+Section: libs
+Homepage: https://integrativemodeling.org/rmf
+Vcs-Browser: https://github.com/salilab/rmf/
+
+Package: rmf-dev
+Section: libdevel
+Architecture: any
+Depends: rmf (= ${binary:Version}), ${misc:Depends}, cmake, swig, libboost-filesystem-dev, libboost-iostreams-dev, libboost-program-options-dev, libboost-thread-dev, libhdf5-dev, python3-dev, python3-numpy
+Description: Library to support reading and writing of RMF files
+ Headers to compile against RMF.
+
+Package: rmf
+Section: libs
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, python3-numpy
+Description: Library to support reading and writing of RMF files
+  The library provides support for the RMF file format for storing hierarchical
+  molecular data (such as atomic or coarse grained representations of proteins),
+  along with markup, including geometry and score data.

tools/debian/copyright

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+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: rmf
+Source: https://integrativemodeling.org/rmf/
+
+Copyright: 2007-2024 IMP Inventors
+License: Apache

tools/debian/make-package.sh

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+#!/bin/sh
+# Build a Debian package from source
+
+set -e
+
+CODENAME=`lsb_release -c -s`
+
+# Make sure we can find the rest of our input files
+TOOL_DIR=`dirname "$0"`
+# Get absolute path to top dir
+TOP_DIR=`cd "${TOOL_DIR}/../.." && pwd`
+
+cd ${TOP_DIR}
+rm -rf debian
+cp -r util/debian/ .
+rm debian/make-package.sh
+sed -i -e "s/\@CODENAME\@/$CODENAME/g" debian/changelog
+
+if [ "${CODENAME}" = "focal" ]; then
+  sed -i -e "s/debhelper-compat (= 13)/debhelper-compat (= 12)/" debian/control
+fi
+
+dpkg-buildpackage -S

tools/debian/rmf-dev.install

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+usr/lib/*/libRMF*.so
+usr/include/*
+usr/share/RMF/swig

tools/debian/rmf.install

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+usr/lib/*/libRMF*.so.*
+usr/lib/python3*/dist-packages/RMF*
+usr/lib/python3*/dist-packages/_RMF*
+usr/bin/rmf3_dump
+usr/bin/rmf_cat
+usr/bin/rmf_frames
+usr/bin/rmf_info
+usr/bin/rmf_interpolate
+usr/bin/rmf_pdb
+usr/bin/rmf_show
+usr/bin/rmf_signature
+usr/bin/rmf_slice
+usr/bin/rmf_transform
+usr/bin/rmf_update
+usr/bin/rmf_validate
+usr/bin/rmf_xml

tools/debian/rmf.postinst

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+#!/bin/sh
+python3 -m compileall -q /usr/lib/python3.*/dist-packages/RMF.py
+python3 -m compileall -q /usr/lib/python3.*/dist-packages/RMF_HDF5.py

tools/debian/rmf.prerm

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+#!/bin/sh
+rm -f /usr/lib/python3.*/dist-packages/__pycache__/RMF.*.pyc
+rm -f /usr/lib/python3.*/dist-packages/__pycache__/RMF_HDF5.*.pyc

tools/debian/rules

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+#!/usr/bin/make -f
+# -*- makefile -*-
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+# Don't use Debian-provided flags for now; they slow down the build
+CFLAGS :=
+CXXFLAGS :=
+LDFLAGS :=
+
+%:
+	dh $@ 
+
+override_dh_auto_configure:
+	mkdir build
+	cd build && py3_ver=`python3 -c "import sys; print('%d.%d' % sys.version_info[:2])"` \
+	         && cmake .. -DCMAKE_BUILD_TYPE=Release \
+	        -DCMAKE_INSTALL_PYTHONDIR=/usr/lib/python$${py3_ver}/dist-packages \
+                -DCMAKE_INSTALL_PREFIX=/usr -DUSE_PYTHON2=off
+
+override_dh_auto_build:
+	$(MAKE) -C build
+
+override_dh_install:
+	$(MAKE) -C build DESTDIR=$(CURDIR)/debian/tmp install
+	# Make sure all Python applications use the system Python in /usr/bin
+	perl -pi -e 's@^#!.*python.*$$@#!/usr/bin/python3@' debian/tmp/usr/bin/*
+	dh_install
+	dh_missing --fail-missing
+
+override_dh_compress:
+	# Don't compress example files, since then they won't work!
+	dh_compress -Xexamples

tools/debian/source/format

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+3.0 (quilt)