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MetaBridge

Description

MetaBridge is a data integration system for integration of metabolomics data with other omics types, chiefly transcriptomics and proteomics.

Contents

Usage

MetaBridge is designed to facilitate integrative analysis by identifying the enzymes that directly interact with metabolites of interest. A pipeline may be designed as such:

Pipeline Schema

Tutorial

To learn how to use MetaBridge as part of a network-based integrative analysis workflow, please read our tutorial.

Installation (@async branch)

MetaBridge@async uses Promises, a framework for asynchronous programming in R. From the promises readme:

A promise library for R. https://rstudio.github.io/promises

devtools::install_github("rstudio/promises")

Neither the CRAN nor GitHub master branch versions of Shiny support promises. Until support is merged, you'll have to install from this branch:

devtools::install_github("rstudio/shiny@async")
devtools::install_github("rstudio/DT@async")