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Merge branch 'develop' of https://github.com/samtools/samtools into d…
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…evelop
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jkbonfield committed Oct 29, 2014
2 parents 4e3620a + 01465e8 commit d357897
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion bam_stat.c
Original file line number Diff line number Diff line change
Expand Up @@ -93,7 +93,7 @@ int bam_flagstat(int argc, char *argv[])
s = bam_flagstat_core(fp);
printf("%lld + %lld in total (QC-passed reads + QC-failed reads)\n", s->n_reads[0], s->n_reads[1]);
printf("%lld + %lld secondary\n", s->n_secondary[0], s->n_secondary[1]);
printf("%lld + %lld supplimentary\n", s->n_supp[0], s->n_supp[1]);
printf("%lld + %lld supplementary\n", s->n_supp[0], s->n_supp[1]);
printf("%lld + %lld duplicates\n", s->n_dup[0], s->n_dup[1]);
printf("%lld + %lld mapped (%.2f%%:%.2f%%)\n", s->n_mapped[0], s->n_mapped[1], (float)s->n_mapped[0] / s->n_reads[0] * 100.0, (float)s->n_mapped[1] / s->n_reads[1] * 100.0);
printf("%lld + %lld paired in sequencing\n", s->n_pair_all[0], s->n_pair_all[1]);
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