Skip to content

HTTPS clone URL

Subversion checkout URL

You can clone with
or
.
Download ZIP
Branch: master
Fetching contributors…

Cannot retrieve contributors at this time

82 lines (79 sloc) 16.268 kB
#
# Keys (Column 3: "type") constrained to be either:
# (a) a term from the "lite" sequence ontology, SOFA;
# (b) a SOFA accession number (SO:000000).
#
# key Qualifiers (@=mandatory)
# ======= ========================
centromere ID Name Alias Parent Note Target Gap Derives_from feature_id isObsolete timelastmodified note comment private curation
region ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified description locus stable_id EC_number gene_symbol Ontology_term dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score
contig ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score comment
#supercontig ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score
#chromosome ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified note comment description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score
gene ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score private comment
#CDS ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified codon_start description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score results note comment job
polypeptide ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref product molecule_type size organism_name strain topology localization gff_source gff_seqname score mass isoelectric charge source private signal_peptide membrane_structure cytoplasmic_polypeptide_region non_cytoplasmic_polypeptide_region transmembrane_polypeptide_region cytoplasm_location transmembrane non_cytoplasm_location GPI_anchor_cleavage_site comment curation translation
pseudogene ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score private
pseudogenic_exon ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score private
pseudogenic_transcript ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score product
intron ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score
exon ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified codon_start description locus stable_id EC_number gene_symbol Ontology_term Dbxref molecule_type size organism_name strain topology localization gff_source gff_seqname score
three_prime_UTR ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified systematic_id note comment private curation
five_prime_UTR ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified systematic_id note comment private curation
transcript ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified private comment
primary_transcript ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified product note comment controlled_curation
tRNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified product note comment controlled_curation private locus_tag
rRNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified product note comment controlled_curation private locus_tag
tmRNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified product note comment controlled_curation private locus_tag
mRNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified product note comment controlled_curation private locus_tag
ncRNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified product note comment controlled_curation private locus_tag
snRNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified product note comment controlled_curation private locus_tag
scRNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified product note comment controlled_curation private locus_tag
snoRNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term Start_range End_range feature_id isObsolete timelastmodified product note comment controlled_curation private locus_tag
polypeptide_domain ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified
polypeptide_motif ID Name Alias Parent Note Target Gap Derives_from feature_id isObsolete timelastmodified
signal_peptide ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified
match ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified
nucleotide_match ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified gff_source gff_seqname score
translated_nucleotide_match ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified
protein_match ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified cluster gff_source gff_seqname score
sequence_difference ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified
direct_repeat ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified
inverted_repeat ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified
dispersed_repeat ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified
repeat_family ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified gff_source gff_seqname score
transposable_element ID Name Alias Parent Target Gap Derives_from Note Dbxref Ontology_term feature_id isObsolete timelastmodified
binding_site ID Name Alias Parent Target Gap Derives_from Note Dbxref Ontology_term feature_id isObsolete timelastmodified
#minus_10_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence function gene label locus_tag map note comment operon partial standard_name
#minus_35_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence function gene label locus_tag map note comment operon partial standard_name
#three_prime_clip ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence function gene label locus_tag map note comment partial standard_name
#five_prime_clip ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence function gene label locus_tag map note comment partial standard_name
#CAAT_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence gene label locus_tag map note comment partial
#D_loop ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence gene label locus_tag map note comment partial
#GC_signal ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence gene label locus_tag map note comment partial
three_prime_LTR ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence function gene label locus_tag map note comment partial standard_name
five_prime_LTR ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence function gene label locus_tag map note comment partial standard_name
N_region ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation codon codon_start evidence gene label locus_tag map note comment partial product pseudo standard_name
#STS ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence gene label locus_tag map note comment partial standard_name
#TATA_box ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence gene label locus_tag map note comment partial
#attenuator ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence gene label locus_tag map note comment operon partial phenotype
#enhancer ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence gene label locus_tag map note comment partial standard_name
gap ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified @estimated_length score
#iDNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence function gene label locus_tag map note comment number partial standard_name
#mature_peptide ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified EC_number allele citation codon codon_start evidence function gene label locus_tag map note comment partial product pseudo standard_name
#modified_base_site ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified @mod_base allele citation evidence frequency gene label locus_tag map note comment
operon ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified @operon allele citation evidence function label map note comment phenotype pseudo standard_name
polyA_signal_sequence ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence gene label locus_tag map note comment partial
polyA_site ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence gene label locus_tag map note comment
#precursor_RNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence function gene label locus_tag map note comment operon partial product standard_name
primary_transcript ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence function gene label locus_tag map note comment operon partial standard_name
#primer_binding_site ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified PCR_conditions allele citation evidence gene label locus_tag map note comment partial standard_name
promoter ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence function gene label locus_tag map note comment operon partial phenotype pseudo standard_name
#protein_binding_site ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified @bound_moiety allele citation evidence function gene label locus_tag map note comment partial standard_name
origin_of_replication ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation direction evidence gene label locus_tag map note comment partial standard_name
repeat_region ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence function gene insertion_seq label locus_tag map note comment partial rpt_family rpt_type rpt_unit standard_name DNA_transposon
repeat_unit ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence function gene label locus_tag map note comment partial rpt_family rpt_type rpt_unit
#satellite_DNA ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence gene label locus_tag map note comment partial rpt_family rpt_type rpt_unit standard_name
#stem_loop ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence function gene label locus_tag map note comment operon partial standard_name
#terminator ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation evidence gene label locus_tag map note comment operon partial standard_name
#transit_peptide ID Name Alias Parent Note Target Gap Derives_from Dbxref Ontology_term feature_id isObsolete timelastmodified allele citation codon codon_start evidence function gene label locus_tag map note comment partial product pseudo standard_name
Jump to Line
Something went wrong with that request. Please try again.