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update

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commit eefe3086cf161348323325a5c4e69cf1ff827ed7 1 parent 396ed8e
tcarver authored
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@@ -1,5 +1,28 @@
Version XX
+ Add validation checks. This will check the following:
+ All file types:
+ - CDS have no internal stop codon
+ - CDS have valid stop codon
+ GFF / Chado:
+ - check complete gene model
+ - check boundaries are valid
+ - check all features are on the same strand
+ - check CDS features have a phase
+ - check attribute column
+ - qualifiers have a value (not empty)
+ - only reserved tags start with uppercase
+
+ Validation can be run in two ways:
+ 1. using the option in View->Feature Filters->Validation checks... which shows
+ 'failed' features in feature list windows
+ 2. selecting 'Validation report ...' option in the popup menu when right clicking
+ on the feature display. This produces a report with an option to auto-fix gene
+ boundaries and stop codons.
+
+
+Version 15
+
Multiple BAM panels can be opened using the bamClone flag this is used with
the -Dbam flag:
art -Dbam='/pathToFile/file1.bam,/pathToFile/file2.bam' -DbamClone=n
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