Merge pull request #86 from andrewjpage/increase_memory_blastp

increase blastp min memory to 3gb from 100
sanger-pathogens · Jan 21, 2015 · 3a0d494 · 3a0d494
2 parents 054f19c + 19937e2
commit 3a0d494
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/lib/Bio/PanGenome/ParallelAllAgainstAllBlast.pm b/lib/Bio/PanGenome/ParallelAllAgainstAllBlast.pm
@@ -99,13 +99,13 @@ sub _build__memory_required_in_mb
 {
   my ($self) = @_;
   my $filename = $self->fasta_file;
-  my $file_size = 1000;
+  my $file_size = 3000;
   if(-e $filename)
   {
     $file_size = -s $filename;
-    $file_size *=10;
+    $file_size *=12;
     $file_size = int($file_size/1000000);
-    $file_size = 100 if($file_size < 100);
+    $file_size = 3000 if($file_size < 3000);
   }
 
   return $file_size;