Accessory genes newick file contains full path of infividual files

[dutchscientist]

The accessory_binary_genes.fa.newick addition is great. One thing I noticed is that the name of each entry contains the full path name, i.e. /usr/name/yadda1/yadda2/roary/cxgf68xy/sample1, /usr/name/yadda1/yadda2/roary/cxgf68xy/sample2, etc.

I would prefer only the names without the path, is inclusion of the full pathname by design?

[andrewjpage]

Hi,
I fixed the issue just this morning, so updating roary to 3.4.3 or above
will make everything work.
Andrew

On 12 November 2015 at 12:17, dutchscientist notifications@github.com
wrote:

The accessory_binary_genes.fa.newick addition is great. One thing I
noticed is that the name of each entry contains the full path name, i.e.
/usr/name/yadda1/yadda2/roary/cxgf68xy/sample1,
/usr/name/yadda1/yadda2/roary/cxgf68xy/sample2, etc.

I would prefer only the names without the path, is inclusion of the full
pathname by design?

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#200.

[dutchscientist]

Great, wanted to notify you earlier but only got around to it now. Thanks!