Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update Kraken QC #125

Merged
merged 9 commits into from
May 21, 2015
Merged

Update Kraken QC #125

merged 9 commits into from
May 21, 2015

Conversation

andrewjpage
Copy link
Member

Add a test database for Kraken so it can actually run on data.
Refactor the QC so that it can run in parallel and it uses FASTA files directly instead of shredding into FASTQ.
Allow for external users to run the QC step.

martinghunt added a commit that referenced this pull request May 21, 2015
@martinghunt martinghunt merged commit c5251f4 into sanger-pathogens:master May 21, 2015
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

2 participants