Extract IDs from GFF file using Bio::Perl #138
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andrewjpage
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Extract IDs from GFF file using Bio::Perl
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For performance reasons, sed and awk were used to convert a gff file to a bed file, however it only worked with gnu-sed, not the unix sed that comes with osx, so I've reverted back to using Bio::Perl, which is a bit slower.
Calling segmasker as a separate step has been removed since its part of the makedb process.