Duplicate sequences in pan genome reference fasta #182
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jgtate
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Sep 28, 2015
…asta Duplicate sequences in pan genome reference fasta
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Fixes bug where the pan genome reference fasta would be appended to in subsequent runs, leading to duplicate incorrect sequences.
Add group name to pan reference.
Remove directorys from column headings for samples in gene presence and absence spreadsheet
Generate intermediate protein files in temp directory.
Generate fofn in temp directory.
Fixes issues raised in RT 490749.
Partially fixes #177