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Accessory binary fasta contains all C's fix #210

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andrewjpage
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Fixes issue:
#202

where the accessory fasta file is full of C's and the tree has no branch lengths

andrewjpage added a commit that referenced this pull request Nov 26, 2015
Accessory binary fasta contains all C's fix
@andrewjpage andrewjpage merged commit 0565124 into sanger-pathogens:master Nov 26, 2015
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Also fixes #204

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