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update usage text for iterative CD-hit #301

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Jan 16, 2017
Merged

update usage text for iterative CD-hit #301

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2 changes: 1 addition & 1 deletion dist.ini
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
name = Bio-Roary
version = 3.7.0
version = 3.7.1
author = Andrew J. Page <ap13@sanger.ac.uk>
license = GPL_3
copyright_holder = Wellcome Trust Sanger Institute
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6 changes: 4 additions & 2 deletions lib/Bio/Roary/CommandLine/IterativeCdhit.pm
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Expand Up @@ -97,10 +97,12 @@ sub usage_text {

return <<USAGE;
Usage: iterative_cdhit [options]
Iteratively cluster a set of proteins with CD-hit, lower the threshold each time and extracting core genes (1 per isolate) to another file, and remove them from the input proteins file.
Iteratively cluster a FASTA file of proteins with CD-hit, lower the threshold each time and extracting core genes (1 per isolate) to another file, and remove them from the input proteins file.

Required arguments:
-m STR input FASTA file of protein sequences [_combined_files]

Options: -p INT number of threads [1]
-m STR output filename for combined proteins [_combined_files]
-n INT number of isolates [1]
-c STR cd-hit output filename [_clustered]
-f STR output filename for filtered sequences [_clustered_filtered.fa]
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