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Add gnu parallel support #89

Merged
merged 10 commits into from
Feb 11, 2015
Merged

Add gnu parallel support #89

merged 10 commits into from
Feb 11, 2015

Commits on Jan 29, 2015

  1. add parallel runner and cpus

    @andrewjpage
    andrewjpage committed Jan 29, 2015
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Commits on Jan 30, 2015

  1. Add tests for GNU parallel

    @andrewjpage
    andrewjpage committed Jan 30, 2015
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  2. allow group limit to be set

    @andrewjpage
    andrewjpage committed Jan 30, 2015
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  3. don't create plots by default

    @andrewjpage
    andrewjpage committed Jan 30, 2015
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Commits on Feb 2, 2015

  1. don't try to create core if theres no files

    @andrewjpage
    andrewjpage committed Feb 2, 2015
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  2. fix test because single files no longer produced

    @andrewjpage
    andrewjpage committed Feb 2, 2015
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  3. Merge branch 'master' of github.com:sanger-pathogens/Bio-PanGenome in… 

    …to add_gnu_parallel_support

Conflicts:
	lib/Bio/PanGenome/CommandLine/CreatePanGenome.pm
    @andrewjpage
    andrewjpage committed Feb 2, 2015
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  4. remove lsf dependancy

    @andrewjpage
    andrewjpage committed Feb 2, 2015
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  5. older versions of gnuparallel dont take input from file

    @andrewjpage
    andrewjpage committed Feb 2, 2015
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Commits on Feb 4, 2015

  1. make cdhit use multiple threads

    @andrewjpage
    andrewjpage committed Feb 4, 2015
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