Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Die nicely if input reads bad, or when no contigs made #46

Merged
merged 3 commits into from
Jul 9, 2015
Merged

Die nicely if input reads bad, or when no contigs made #46

merged 3 commits into from
Jul 9, 2015

Conversation

martinghunt
Copy link
Contributor

Fixes two bugs:

  1. Errors were not caught when converting reads to fasta, so would continue trying to assemble if input files were invalid and bad things happen. Now it dies gracefully
  2. Sometimes no contigs get made and IVA would die horribly. This is now handled properly with useful output for the user.

jgtate pushed a commit that referenced this pull request Jul 9, 2015
Merge pull request #46 from martinghunt/die_if_reads_bad
9cf81fb 
Die nicely if input reads bad, or when no contigs made
@jgtate jgtate merged commit 9cf81fb into sanger-pathogens:master Jul 9, 2015
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

None yet
2 participants
@martinghunt @jgtate