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XBB.2.3.6 with ORF1a:R4017K (nsp8_R75K), ORF1a:S3099L (nsp4_S336L) and S:N388K (33 seqs, Japan), follows a sub-lineage with S:Y453H (4 seqs, Japan) #450
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Tracking updates: 07-28, 3 seqs from Japan: |
07-31: 2 seqs from Japan: and 17 more failed to catch by query due to quality issues, but UShER somehow place them under this branch: Genomes:
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There are now three sequences in this lineage with S:Y453H from Japan, a very interesting development. Two from Chiba, one from Tokyo. EPI_ISL_18044092, EPI_ISL_18065162, EPI_ISL_18065176 |
08-05, 6 seqs from Japan: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_2a33f_e259f0.json?f_userOrOld=uploaded%20sample Note that there's branch with follows: main proposal > Query for follow-up |
propose it when reaches 35, please. |
08-13, 4 seqs from Japan: |
6 + from jap |
Designated GM.3.1 via cov-lineages/pango-designation@56e3ad0 |
Defining Mutations: On top of XBB.2.3.6's [T22843C > C7105T > C1063T] > G12315A(ORF1a:R4017K) > G26834T > C9561T(ORF1a:S3099L) > T22726A(S:N388K)
Query: C9561T, T22726A
Earliest seq: 2023-05-15 (EPI_ISL_17881889, Tokyo, Japan)
Latest seq: 2023-07-03 (EPI_ISL_17994250, Kumamoto, Japan)
Sampled Countries: Japan (10), USA (3, Virginia, Travel history to Japan)
Genomes:
EPI_ISL_17881889, EPI_ISL_17884007, EPI_ISL_17960078, EPI_ISL_17971830, EPI_ISL_17971864, EPI_ISL_17971891, EPI_ISL_17973271, EPI_ISL_17985853, EPI_ISL_17994250, EPI_ISL_17996449, EPI_ISL_17996453, EPI_ISL_18006463, EPI_ISL_18006974UShER:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_5ff1_be5620.json?f_userOrOld=uploaded%20sample
view from XBB.2.3 polytomy
details
Trivia:
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