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JD.1.2+7-nuc,4-aa including S:E554Q (50 seqs, 6 countries) #870

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aviczhl2 opened this issue Sep 27, 2023 · 13 comments
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JD.1.2+7-nuc,4-aa including S:E554Q (50 seqs, 6 countries) #870

aviczhl2 opened this issue Sep 27, 2023 · 13 comments
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@ryhisner
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designated FLip = S:L455F / S:F456L S:554
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JD.1.2.1

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@aviczhl2
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aviczhl2 commented Sep 27, 2023 •
edited by FedeGueli

JD.1.2+C13968T,C29367T(N:P365L)+C28087T(Orf8:A65V)+T6136C,T18435G,G23222C,C28657T(S:E554Q, Orf1b:D1656E)

GISAID query: T6136C,T18435G,G23222C
No. of seqs: 7(OH,FL,TX,Puerto Rico)

First: EPI_ISL_18119752, 2023-8-8
Latest: EPI_ISL_18309226, 2023-9-6

usher

image
@FedeGueli FedeGueli added S:554 FLip = S:L455F / S:F456L PLPro labels Sep 27, 2023
@aviczhl2
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Hi Fede, That's Orf1b not 1a.

@FedeGueli FedeGueli removed the PLPro label Sep 27, 2023
@FedeGueli
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Hi Fede, That's Orf1b not 1a.

ahha thank you very much!! what an epic fail from me! Sorry!

@krosa1910
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Now spread to Canada, and 11 seqs in total.
Screenshot 2023-10-04 at 6 27 35 PM

@aviczhl2 aviczhl2 changed the title JD.1.2+7-nuc,4-aa including S:E554Q (7 seqs, USA) JD.1.2+7-nuc,4-aa including S:E554Q (11 seqs, 2 countries) Oct 4, 2023
@aviczhl2 aviczhl2 changed the title JD.1.2+7-nuc,4-aa including S:E554Q (11 seqs, 2 countries) JD.1.2+7-nuc,4-aa including S:E554Q (12 seqs, 2 countries) Oct 10, 2023
@FedeGueli FedeGueli changed the title JD.1.2+7-nuc,4-aa including S:E554Q (12 seqs, 2 countries) JD.1.2+7-nuc,4-aa including S:E554Q (19 seqs, 2 countries) Oct 12, 2023
@FedeGueli
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19 batch from Canada

@aviczhl2 aviczhl2 changed the title JD.1.2+7-nuc,4-aa including S:E554Q (19 seqs, 2 countries) JD.1.2+7-nuc,4-aa including S:E554Q (20 seqs, 2 countries) Oct 16, 2023
@aviczhl2
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30, Italy

@aviczhl2 aviczhl2 changed the title JD.1.2+7-nuc,4-aa including S:E554Q (20 seqs, 2 countries) JD.1.2+7-nuc,4-aa including S:E554Q (30 seqs, 3 countries) Oct 21, 2023
@FedeGueli
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This seems fast propose it when it reaches 50

@FedeGueli FedeGueli added To be proposed Green light for proposal and removed Rapid review needed labels Oct 22, 2023
@aviczhl2
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32, Brazil

@aviczhl2 aviczhl2 changed the title JD.1.2+7-nuc,4-aa including S:E554Q (30 seqs, 3 countries) JD.1.2+7-nuc,4-aa including S:E554Q (32 seqs, 4 countries) Oct 27, 2023
@FedeGueli
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FedeGueli commented Oct 27, 2023 •
edited

This carries PLPro_D93E (NSP3_D838E) Scratch this it is orfb EDITED

@FedeGueli FedeGueli changed the title JD.1.2+7-nuc,4-aa including S:E554Q (32 seqs, 4 countries) JD.1.2+7-nuc,4-aa including S:E554Q and PLPro_D93E(32 seqs, 4 countries) Oct 27, 2023
@aviczhl2
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This carries PLPro_D93E (NSP3_D838E)

Hi, Fede, again this is Orf1b not 1a.

@FedeGueli FedeGueli changed the title JD.1.2+7-nuc,4-aa including S:E554Q and PLPro_D93E(32 seqs, 4 countries) JD.1.2+7-nuc,4-aa including S:E554Q (32 seqs, 4 countries) Oct 27, 2023
@FedeGueli FedeGueli removed the PLPro label Oct 27, 2023
@FedeGueli
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This carries PLPro_D93E (NSP3_D838E)

Hi, Fede, again this is Orf1b not 1a.

haha thank you! corrected

@aviczhl2 aviczhl2 changed the title JD.1.2+7-nuc,4-aa including S:E554Q (32 seqs, 4 countries) JD.1.2+7-nuc,4-aa including S:E554Q (43 seqs, 4 countries) Nov 1, 2023
@aviczhl2
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aviczhl2 commented Nov 3, 2023

44,Netherlands

@aviczhl2 aviczhl2 changed the title JD.1.2+7-nuc,4-aa including S:E554Q (43 seqs, 4 countries) JD.1.2+7-nuc,4-aa including S:E554Q (44 seqs, 5 countries) Nov 3, 2023
@aviczhl2 aviczhl2 changed the title JD.1.2+7-nuc,4-aa including S:E554Q (44 seqs, 5 countries) JD.1.2+7-nuc,4-aa including S:E554Q (47 seqs, 5 countries) Nov 7, 2023
@aviczhl2 aviczhl2 changed the title JD.1.2+7-nuc,4-aa including S:E554Q (47 seqs, 5 countries) JD.1.2+7-nuc,4-aa including S:E554Q (48 seqs, 5 countries) Nov 9, 2023
@aviczhl2
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+1 Belgium

@aviczhl2 aviczhl2 changed the title JD.1.2+7-nuc,4-aa including S:E554Q (48 seqs, 5 countries) JD.1.2+7-nuc,4-aa including S:E554Q (49 seqs, 6 countries) Nov 10, 2023
@aviczhl2 aviczhl2 changed the title JD.1.2+7-nuc,4-aa including S:E554Q (49 seqs, 6 countries) JD.1.2+7-nuc,4-aa including S:E554Q (50 seqs, 6 countries) Nov 12, 2023
@aviczhl2 aviczhl2 mentioned this issue Nov 12, 2023
Closed
corneliusroemer added a commit to cov-lineages/pango-designation that referenced this issue Nov 12, 2023
@corneliusroemer
Designate JD.1.2.1 (S:E554Q, from sars-cov-2-variants/lineage-proposa…
31270ad 
…ls#870) with 50 seqs

Resolves sars-cov-2-variants/lineage-proposals#870
@FedeGueli FedeGueli added this to the JD.1.2.1 milestone Nov 12, 2023
@FedeGueli FedeGueli added designated Deltacron and removed To be proposed Green light for proposal Deltacron labels Nov 12, 2023
@FedeGueli
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JD.1.2.1 via cov-lineages/pango-designation@31270ad

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@ryhisner ryhisner

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designated FLip = S:L455F / S:F456L S:554
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@aviczhl2 @ryhisner @FedeGueli @krosa1910