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Delete get_nz_median, fix usage in get_residuals_var, add unit tests #155

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merged 1 commit into from
Jan 16, 2023

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boomanaiden154
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This patch deletes some leftover artifacts from get_nz_median (such as the documentation), fixes the usage of get_nz_median2 in get_residual_var since it also needs to support subsetting genes, and adds two unit tests to ensure that get_nz_median2 is functioning correctly.

This should keep the fast performance of the implementation for get_nz_median2 while also allowing gene subsetting.

Co-authored-by: @ScreachingFire

This patch deletes some leftover artifacts from get_nz_median (such as
the documentation), fixes the usage of get_nz_median2 in
get_residual_var since it also needs to support subsetting genes, and
adds two unit tests to ensure that get_nz_median2 is functioning
correctly.

Co-authored-by: Todd Pocuca <toddpocu@gmail.com>
@saketkc
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saketkc commented Jan 16, 2023

Thanks very musch @boomanaiden154 and @ScreachingFire! This looks good.

@saketkc saketkc merged commit df16d84 into satijalab:develop Jan 16, 2023
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2 participants