can't install seurat wrapper

[nhyda]

here is the error message

Installing package into ‘/usr/local/lib/R/site-library’
(as ‘lib’ is unspecified)
* installing *source* package ‘SeuratWrappers’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Error: object ‘LogSeuratCommand’ is not exported by 'namespace:Seurat'
Execution halted
ERROR: lazy loading failed for package ‘SeuratWrappers’
* removing ‘/usr/local/lib/R/site-library/SeuratWrappers’
Error in i.p(...) : 
  (converted from warning) installation of package ‘/tmp/RtmpjqWJ0V/file302df65dbd/SeuratWrappers_0.1.0.tar.gz’ had non-zero exit status

here is the R sessionInfo

R version 3.6.0 (2019-04-26) 
Platform: x86_64-pc-linux-gnu (64-bit) 
Running under: Debian GNU/Linux 9 (stretch)  
Matrix products: default 
BLAS/LAPACK: /usr/lib/libopenblasp-r0.2.19.so  
locale:  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8     LC_MONETARY=en_US.UTF-8     [6] LC_MESSAGES=C              LC_PAPER=en_US.UTF-8       LC_NAME=C                  LC_ADDRESS=C               LC_TELEPHONE=C             [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C     

attached base packages: [1] grid      stats     graphics  grDevices utils     datasets  methods   base       
other attached packages:  [1] clustree_0.4.0  ggraph_1.0.2    cowplot_0.9.4   tictoc_1.0      forcats_0.4.0   stringr_1.4.0   dplyr_0.8.1     purrr_0.3.2     readr_1.3.1     [10] tidyr_0.8.3     tibble_2.1.1    ggplot2_3.1.1   tidyverse_1.2.1 velocyto.R_0.6  Matrix_1.2-17   Seurat_3.0.0     

oaded via a namespace (and not attached):   
[1] Rtsne_0.15          colorspace_1.4-1    ggridges_0.5.1      rprojroot_1.3-2     fs_1.3.1            rstudioapi_0.10     listenv_0.7.0        
[8] farver_1.1.0        npsurv_0.4-0        remotes_2.0.4       ggrepel_0.8.1       lubridate_1.7.4     xml2_1.2.0          codetools_0.2-16     
[15] splines_3.6.0       R.methodsS3_1.7.1   lsei_1.2-0          knitr_1.22          pkgload_1.0.2       polyclip_1.10-0     jsonlite_1.6         
[22] packrat_0.5.0       broom_0.5.2         ica_1.0-2           cluster_2.0.8       png_0.1-7           R.oo_1.22.0         ggforce_0.2.2       
[29] sctransform_0.2.0   compiler_3.6.0      httr_1.4.0          backports_1.1.4     assertthat_0.2.1    lazyeval_0.2.2      cli_1.1.0            
[36] tweenr_1.0.1        prettyunits_1.0.2   htmltools_0.3.6     tools_3.6.0         rsvd_1.0.0          igraph_1.2.4.1      gtable_0.3.0         
[43] glue_1.3.1          RANN_2.6.1          reshape2_1.4.3      Rcpp_1.0.1          Biobase_2.44.0      cellranger_1.1.0    gdata_2.18.0         
[50] ape_5.3             nlme_3.1-139        gbRd_0.4-11         lmtest_0.9-37       xfun_0.7            ps_1.3.0            globals_0.12.4       
[57] testthat_2.1.1      rvest_0.3.3         irlba_2.3.3         devtools_2.0.2      gtools_3.8.1        future_1.13.0       MASS_7.3-51.4        
[64] zoo_1.8-5           scales_1.0.0        pcaMethods_1.76.0   hms_0.4.2           parallel_3.6.0      RColorBrewer_1.1-2  curl_3.3             
[71] yaml_2.2.0          memoise_1.1.0       reticulate_1.12     pbapply_1.4-0       gridExtra_2.3       stringi_1.4.3       desc_1.2.0           
[78] caTools_1.17.1.2    BiocGenerics_0.30.0 pkgbuild_1.0.3      bibtex_0.4.2        Rdpack_0.11-0       SDMTools_1.1-221.1  rlang_0.3.4          
[85] pkgconfig_2.0.2     bitops_1.0-6        evaluate_0.13       lattice_0.20-38     ROCR_1.0-7          htmlwidgets_1.3     processx_3.3.1       
[92] tidyselect_0.2.5    plyr_1.8.4          magrittr_1.5        R6_2.4.0            gplots_3.0.1.1      generics_0.0.2      pillar_1.4.0         
[99] haven_2.1.0         withr_2.1.2         mgcv_1.8-28         fitdistrplus_1.0-14 survival_2.44-1.1   future.apply_1.2.0  tsne_0.1-3          
[106] modelr_0.1.4        crayon_1.3.4        KernSmooth_2.23-15  plotly_4.9.0        rmarkdown_1.12      usethis_1.5.0       viridis_0.5.1       
[113] readxl_1.3.1        data.table_1.12.2   callr_3.2.0         metap_1.1           digest_0.6.18       R.utils_2.8.0       munsell_0.5.0       
[120] viridisLite_0.3.0   sessioninfo_1.1.1

[andrewwbutler]

Hi,

Please try updating your Seurat installation.

[nhyda]

install seurat 3.1 solved my problem.

[ahmedibatta]

@mojaveazure , I faced the same problem now although I have the latest version of Seurat

when I use remotes::install_github('satijalab/seurat-wrappers')

R version: 4.1.0

packageVersion("Seurat")
[1] ‘4.0.3’
packageVersion("liger")
[1] ‘2.0.1’