v.0.9.9

webknossos

Breaking Changes

• Changed the interface and behavior of Annotations and Skeletons, as well as nml-parsing related code.
  #602
  • webknossos.skeleton.nml is not exposed anymore. The previous functionality may be found in
    webknossos._nml and webknossos/annotation/_nml_conversion.py if needed, but please not that
    this is not part of the public API and may change at any time. Please use the respective logic on the
    Annotation class instead.
  • The name attribute on the Skeleton class changed to dataset_name.
  • The deprecated Skeleton.offset attribute is removed.
  • The following attributes are removed from the Skeleton class, instead they are part of the
    Annotation class now: time, edit_position, edit_rotation, zoom_level, task_bounding_box,
    user_bounding_boxes.
  • The following Annotation methods were renamed and their arguments changed slightly:
    • save_volume_annotation ➜ export_volume_layer_to_dataset
    • temporary_volume_annotation_layer_copy ➜ temporary_volume_layer_copy

Added

• Added new features to the Annotation and Skeleton classes. #602
  • The Skeleton class has new attributes description and organization_id.
  • The Annotation class has new attributes username and annotation_id, as well as the following
    attributes that are proxies for the skeleton attributes: dataset_name, scale, organization_id, description
  • Annotations can now be initialized from their attributes and an optional skeleton.
  • New methods on Annotation: upload, add_volume_layer, delete_volume_layer
  • Annotation.load() and annoation.save() also works with .nml files.
• Added MagView.get_views_on_disk() as a shortcut to turning get_bounding_boxes_on_disk into views.
  #621

Fixed

• Fixed the download of skeleton-only annotations. #602