Reimplement populate_fiji.sh in Kotlin

Co-authored-by: Giuseppe Barbieri <elect86@gmail.com>
scenerygraphics · Jan 19, 2024 · e620414 · e620414
1 parent 7564070
commit e620414
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Showing 3 changed files with 359 additions and 212 deletions.
diff --git a/build.gradle.kts b/build.gradle.kts
@@ -10,6 +10,7 @@ plugins {
     kotlin("kapt")
     sciview.publish
     sciview.sign
+    sciview.populateFiji
     id("org.jetbrains.dokka")
     jacoco
     `maven-publish`
@@ -27,8 +28,6 @@ repositories {
         logger.warn("Using local Maven repository as source")
         mavenLocal()
     }
-    maven("https://jitpack.io")
-    mavenCentral()
     maven("https://maven.scijava.org/content/groups/public")
 }
 
@@ -51,6 +50,10 @@ dependencies {
         version { strictly(sceneryVersion) }
         exclude("org.biojava.thirdparty", "forester")
         exclude("null", "unspecified")
+
+        // from biojava artifacts; clashes with jakarta-activation-api
+        exclude("javax.xml.bind", "jaxb-api")
+        exclude("org.glassfish.jaxb", "jaxb-runtime")
     }
 
     implementation("net.java.dev.jna:jna-platform:5.11.0")
@@ -61,8 +64,6 @@ dependencies {
 
     implementation("com.formdev:flatlaf")
 
-    implementation("org.slf4j:slf4j-simple")
-
     // SciJava dependencies
 
     implementation("org.yaml:snakeyaml") {
@@ -121,7 +122,7 @@ dependencies {
     implementation(platform(kotlin("bom")))
     implementation(kotlin("stdlib-jdk8"))
     testImplementation(kotlin("test-junit"))
-    testImplementation("org.slf4j:slf4j-simple:1.7.36")
+    testImplementation("org.slf4j:slf4j-simple")
 
     implementation("sc.fiji:bigdataviewer-core")
     implementation("sc.fiji:bigdataviewer-vistools")
@@ -445,4 +446,8 @@ jacoco {
     toolVersion = "0.8.11"
 }
 
+task("copyDependencies", Copy::class) {
+    from(configurations.runtimeClasspath).into("$buildDir/dependencies")
+}
+
 java.withSourcesJar()