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ENH/FIX Replace jaccard_similarity_score by sane jaccard_score #13151

Merged
merged 129 commits into from
Mar 13, 2019
Merged

ENH/FIX Replace jaccard_similarity_score by sane jaccard_score #13151

merged 129 commits into from
Mar 13, 2019

Commits on Nov 7, 2017

  1. multiclass jaccard similarity not equal to accurary_score 

    Fixes scikit-learn#7332
    @gxyd
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Commits on Nov 8, 2017

  1. add space and fix input

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Commits on Nov 10, 2017

  1. score being a n_class size array and weight already taken care of

    @gxyd
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Commits on Nov 24, 2017

  1. add space to fix printing of doctest

    @gxyd
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  2. add support for 'average' of type 'macro', 'micro', 'weighted'

    @gxyd
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Commits on Nov 25, 2017

  1. add tests and make documentation changes

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Commits on Nov 29, 2017

  1. use 'average' for 'multilabel' classification

    @gxyd
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  2. introduce average='binary', average='samples'

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Commits on Dec 1, 2017

  1. show errors and warning before anything 

    this deals with both multilabel and multiclass problems
    @gxyd
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  2. write separate functions

    @gxyd
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Commits on Dec 2, 2017

  1. completely okay API and improved doctest

    @gxyd
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  2. fix lgtm error and better control flow

    @gxyd
    gxyd committed Dec 2, 2017
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  3. add normalize in API

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Commits on Dec 12, 2017

  1. raise ValueError for not-providing 'avergae' in multiclass

    @gxyd
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  2. fixed errors with multiclass for different average values

    @gxyd
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  3. fix tests, use assert_raise_message instead

    @gxyd
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Commits on Dec 15, 2017

  1. add common_test for jaccard_similarity_score

    @gxyd
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Commits on Dec 17, 2017

  1. use average='none-samples' instead of 'normalize=False'

    @gxyd
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  2. average='micro' in multiclass case is equivalent to accuracy_score

    @gxyd
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  3. fixes to multilabel case

    @gxyd
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  4. add error message for average='samples' for non-multilable case

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Commits on Dec 20, 2017

  1. add none-samples in common test

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Commits on Dec 28, 2017

  1. add support for labels in multilabel classification

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Commits on Dec 30, 2017

  1. fix multilablel classification 

    labels, sample_weight seems to be working fine, though haven't
fully testing them again, will do in next commit
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Commits on Dec 31, 2017

  1. fix for multiclass

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Commits on Jan 1, 2018

  1. corrected 'macro', 'weighted' for multiclass only 'micro' remains

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Commits on Jan 2, 2018

  1. fix completely logic of average='micro', now only 'binary' remains

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  2. remove 'warn' from API, after discussion on PR with jnothman

    @gxyd
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  3. fix average='binary'

    @gxyd
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  4. fix doctest, now test_common and lgtm remain to be fixed

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  5. this fixes lgtm?

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Commits on Jan 7, 2018

  1. fix average='micro' for multiclass jaccard

    @gxyd
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  2. add smart tests

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Commits on Jan 8, 2018

  1. first fix for test_common

    @gxyd
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  2. fixes LGTM errors?

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Commits on Jan 9, 2018

  1. remove warning from tests/test_classification.py

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Commits on Jan 10, 2018

  1. simplify code for multilabel jaccard

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Commits on Jan 11, 2018

  1. address Joel's comments

    @gxyd
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  2. fix doc and add average=None test for multiclass 

    now, need to fix common test
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Commits on Jan 12, 2018

  1. fix none-samples jaccard_similarity score to return array of scores

    @gxyd
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Commits on Jan 13, 2018

  1. take of care of zero weights for average='weighted'

    @gxyd
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  2. fix test_common

    @gxyd
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  3. don't bother testing 'sample_weight' and fix test

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Commits on Jan 16, 2018

  1. remove average='none-samples' as a possibility

    @gxyd
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  2. fix average='weighted'

    @gxyd
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  3. use np.in1d instead of np.isin (unavailable in version < 1.13.0)

    @gxyd
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Commits on Jan 17, 2018

  1. address Joel's comments

    @gxyd
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  2. fix lgtm error

    @gxyd
    gxyd committed Jan 17, 2018
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  3. fix lgtm

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Commits on Jan 18, 2018

  1. Fix flake8 errors

    @gxyd
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  2. code coverage

    @gxyd
    gxyd committed Jan 18, 2018
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  3. fix flake8

    @gxyd
    gxyd committed Jan 18, 2018
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  4. improve doc

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Commits on Jan 22, 2018

  1. Merge branch 'master' into jaccard-sim

    @gxyd
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  2. add what's new entry and address Joel's comments

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  3. improve doc's entry

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Commits on Jan 23, 2018

  1. use normalize='true-if-samples' for internal use

    @gxyd
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Commits on Jan 24, 2018

  1. address Joel's comments all, but one

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Commits on Jan 29, 2018

  1. add jaccard similarity score to scorers

    @gxyd
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Commits on Jan 30, 2018

  1. use make_scorer with average='binary'

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  2. fix import and pep8

    @gxyd
    gxyd committed Jan 30, 2018
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  3. fix doc

    @gxyd
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  4. use 'jaccard' instead of 'jaccard_similarity'

    @gxyd
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  5. collect common validation code between prfs and jaccard

    @gxyd
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  6. update docstring and name

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  7. fix pep8

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Commits on Jan 31, 2018

  1. a little more refactoring

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  2. change answer for zeroed multiclass and binary averaging

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Commits on Feb 6, 2018

  1. fix for edge cases

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Commits on Feb 7, 2018

  1. update (refactoring) function name and add doc example

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Commits on Nov 6, 2018

  1. Merge branch 'master' into HEAD

    @jnothman
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  2. Merge branch 'master' into jaccard

    @jnothman
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  3. Fix merge error

    @jnothman
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Commits on Nov 11, 2018

  1. Merge branch 'master' of github.com:scikit-learn/scikit-learn into ja… 

    …ccard-sim
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Commits on Nov 13, 2018

  1. WIP

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Commits on Nov 18, 2018

  1. Make tests pass

    @jnothman
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  2. Credit in what's new

    @jnothman
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  3. Clean merge error in what's new

    @jnothman
    jnothman committed Nov 18, 2018
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  4. Remove debug print

    @jnothman
    jnothman committed Nov 18, 2018
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  5. PEP8

    @jnothman
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  6. new array printing format

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  7. new array printing format #2

    @jnothman
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  8. Revert changes to v0.20.rst

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Commits on Nov 20, 2018

  1. Merge branch 'master' into jaccard-sim

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Commits on Nov 24, 2018

  1. Remove changes due to bad merge

    @jnothman
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  2. Avoid assert_equal

    @jnothman
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  3. cosmit

    @jnothman
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  4. Clean up validation

    @jnothman
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  5. reuse warning code

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Commits on Nov 25, 2018

  1. Merge branch 'master' of github.com:scikit-learn/scikit-learn into ja… 

    …ccard-sim
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Commits on Jan 2, 2019

  1. WIP

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Commits on Feb 4, 2019

  1. Merge branch 'master' into jaccard-sim

    @jnothman
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  2. Clean what's new

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  3. Merge branch 'master' into jaccard-sim

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Commits on Feb 5, 2019

  1. FIX coax tests to pass

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  2. Merge branch 'jaccard-sim' of github.com:jnothman/scikit-learn into j… 

    …accard-sim
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Commits on Feb 12, 2019

  1. Address Adrin's comments

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Commits on Feb 13, 2019

  1. Replace jaccard_similarity_score by sane jaccard_score

    @jnothman
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  2. Update PR numbers in what's new

    @jnothman
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  3. Update average param in test_multioutput

    @jnothman
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  4. Don't special-case the all-zero case

    @jnothman
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  5. Address Hanmin's comments

    @jnothman
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  6. binary and multiclass

    @jnothman
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  7. avoid doctest triggering warning

    @jnothman
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  8. Don't apply common tests to deprecated code

    @jnothman
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  9. Remove errstate use from prfs

    @jnothman
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  10. Adopt tests from scikit-learn#13143

    @qinhanmin2014 @jnothman
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  11. Doctest lines compacted

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Commits on Feb 28, 2019

  1. Reference discussion of 'average'

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  2. Merge branch 'master' into jaccard_score

    @jnothman
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  3. Merge branch 'jaccard_score' of github.com:jnothman/scikit-learn into… 

    … jaccard_score
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  4. Clean up as per Hanmin's comments. Also better example in docs

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    jnothman committed Feb 28, 2019
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Commits on Mar 4, 2019

  1. Hanmin's review

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    jnothman committed Mar 4, 2019
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  2. Merge branch 'master' into jaccard_score

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    jnothman committed Mar 4, 2019
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  3. Rename test function

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    jnothman committed Mar 4, 2019
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  4. TST Add jaccard to metrics with pos_label

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Commits on Mar 5, 2019

  1. Rm partial

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    jnothman committed Mar 5, 2019
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  2. More verbosity re no labels case

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    jnothman committed Mar 5, 2019
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Commits on Mar 6, 2019

  1. flake

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    jnothman committed Mar 6, 2019
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Commits on Mar 12, 2019

  1. Try resolving Olivier's comments

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    jnothman committed Mar 12, 2019
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  2. Fix use of list.remove

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    jnothman committed Mar 12, 2019
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  3. Fix doctest whitespace

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    jnothman committed Mar 12, 2019
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  4. Fix doctest whitespace

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    jnothman committed Mar 12, 2019
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  5. ELLIPSIS too

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    jnothman committed Mar 12, 2019
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  6. Space

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    jnothman committed Mar 12, 2019
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  7. Try putting doctest flags on new line

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    jnothman committed Mar 12, 2019
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Commits on Mar 13, 2019

  1. Doctest whitespace

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    jnothman committed Mar 13, 2019
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  2. fix doctest result

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    jnothman committed Mar 13, 2019
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  3. Fully implement Thomas's vision

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    jnothman committed Mar 13, 2019
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