Merge pull request #122 from MLWave/adapter

Adapter for Networkx

.travis.yml

@@ -5,9 +5,21 @@ python:
   - "3.5"
   - "3.6"
 
+matrix:
+include:
+  - python: 3.7
+    dist: xenial
+    sudo: true
+
+before_install:
+    # Tricks to avoid matplotlib error about X11:
+    # 'no display name and no $DISPLAY environment variable'
+    # http://docs.travis-ci.com/user/gui-and-headless-browsers/#Starting-a-Web-Server
+    - "export DISPLAY=:99.0"
+    - "sh -e /etc/init.d/xvfb start"
+
 install:
-  - pip install .
-  - pip install python-igraph plotly ipywidgets
+  - pip install ".[testing]"
   - pip install pytest-cov
 
 script:

Makefile

@@ -11,4 +11,4 @@ gh-pages:
 	mv -fv docs/_build/html/* .
 	rm -rf docs
 	git add -A
-	git commit -m "Generated gh-pages for `git log master -1 --pretty=short --abbrev-commit`" && git push origin gh-pages ; git checkout master
+	git commit -m "Generated gh-pages for `git log master -1 --pretty=short --abbrev-commit`" && git push scikit gh-pages ; git checkout master

RELEASE.txt

@@ -1,44 +1,39 @@
-Pre-alpha
+Alpha
 
-v00001
-		Wrote class
-		Wrote documentation
-		Added license
+1.1.6 (Nov 8, 2018)
+	Plotly visualization interface.
+	Networkx adapter
+	Bug fixes 
+	Scikit-tda integration
 
-v00002
-		Added a multi-dimensional mode: use all dimensions.
-		Added case study: 3D point cloud data for animals
-		Added case study: Make circles
-		Added advanced parameters for graph layout settings. Should probably be sliders on the .html page itself.
-		Improved documentation
-		Added disclaimer
-		Added todo
-		Added release log
+1.1.2
+	Bug fix, setup.py did not include static directory so installation visualizations did not work when installed from pypi.
+	Add Jupyter notebook support
+1.1
+    Massive visualization upgrades
+    Separation of HTML, JS, CSS, and Python code
+    New nerves and covers API
+    Documentation site
 
-v00003
-		Refactored dimension index to use a list of arbitrary dimensions
-		Improved verbosity
-		Added levels of verbosity
-		Decreased number of code lines by using a single approach
-		Added sample to explain local linkage True vs. False
-		Added side-view for animal point-cloud data
-		Added a gallery in the example directory
+1.0.1
+	Convert versioning scheme to major.minor.micro
+	Restructure library to be compatible with PyPi installation
+	Minor bug fixes
+	Include preliminary unit test suite
+	Refactor, extract helper classes and helper functions
 
-v00004
-		Added dimensionality reduction
-		Added "digits" case study
-		changed fit to fit_transform and return of data
-		added tooltips
-		added support for custom tooltips
 
-Alpha
+Pre-alpha
 
-v00005
-		Made Python 3 compatible
-		Ability to turn off title, meta and tooltips
-		Ability to set the window height and width of HTML output
-		Added basic support for another color function: average signal
-		De-emphasized link_local functionality, since its current implementation is no good.
+v00009
+
+v00008
+
+v00007
+		Add L2^Norm Lens
+		Add Winsconsin Breast Cancer Data Anomaly Detection Example
+		Fixed bug: k-means with set number of clusters higher than min_cluster_samples
+		Add self.inverse_X for new future feature: transforming on unseen data.
 
 v00006
 		Removed link_local functionality
@@ -49,28 +44,40 @@ v00006
 		Added feature to use reducers/manifold learning/dimensions and stat functions
 		Added 7 projections/lenses from statistics
 
-v00007
-		Add L2^Norm Lens
-		Add Winsconsin Breast Cancer Data Anomaly Detection Example
-		Fixed bug: k-means with set number of clusters higher than min_cluster_samples
-		Add self.inverse_X for new future feature: transforming on unseen data.
+v00005
+		Made Python 3 compatible
+		Ability to turn off title, meta and tooltips
+		Ability to set the window height and width of HTML output
+		Added basic support for another color function: average signal
+		De-emphasized link_local functionality, since its current implementation is no good.
 
-v00008
-v00009
+v00004
+		Added dimensionality reduction
+		Added "digits" case study
+		changed fit to fit_transform and return of data
+		added tooltips
+		added support for custom tooltips
 
-1.0.1
-		Convert versioning scheme to major.minor.micro
-		Restructure library to be compatible with PyPi installation
-		Minor bug fixes
-		Include preliminary unit test suite
-		Refactor, extract helper classes and helper functions
+v00003
+		Refactored dimension index to use a list of arbitrary dimensions
+		Improved verbosity
+		Added levels of verbosity
+		Decreased number of code lines by using a single approach
+		Added sample to explain local linkage True vs. False
+		Added side-view for animal point-cloud data
+		Added a gallery in the example directory
 
-1.1
-    Massive visualization upgrades
-    Separation of HTML, JS, CSS, and Python code
-    New nerves and covers API
-    Documentation site
+v00002
+		Added a multi-dimensional mode: use all dimensions.
+		Added case study: 3D point cloud data for animals
+		Added case study: Make circles
+		Added advanced parameters for graph layout settings. Should probably be sliders on the .html page itself.
+		Improved documentation
+		Added disclaimer
+		Added todo
+		Added release log
 
-1.1.2
-		Bug fix, setup.py did not include static directory so installation visualizations did not work when installed from pypi.
-		Add Jupyter notebook support
+v00001
+		Wrote class
+		Wrote documentation
+		Added license