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Working and tested end-to-end version for infant and paediatric data (raw dwi/anat --> connectomics) #6

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Working and tested end-to-end version for infant and paediatric data (raw dwi/anat --> connectomics) #6

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Commits on Aug 3, 2023

  1. Fixing registration and masks handling

    @gagnonanthony
    gagnonanthony committed Aug 3, 2023
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Commits on Aug 8, 2023

  1. fix transform labels and minor changes

    @gagnonanthony
    gagnonanthony committed Aug 8, 2023
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  2. fix registration channel

    @gagnonanthony
    gagnonanthony committed Aug 8, 2023
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  3. fix typo

    @gagnonanthony
    gagnonanthony committed Aug 8, 2023
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Commits on Sep 12, 2023

  1. Fix USAGE and labels registration

    @gagnonanthony
    gagnonanthony committed Sep 12, 2023
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Commits on Sep 15, 2023

  1. initial move for a more versatile pipeline

    @gagnonanthony
    gagnonanthony committed Sep 15, 2023
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Commits on Sep 18, 2023

  1. fix resample and flatten metrics channel

    @gagnonanthony
    gagnonanthony committed Sep 18, 2023
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  2. fix masking

    @gagnonanthony
    gagnonanthony committed Sep 18, 2023
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  3. fix local_fa_seeding_mask_thr

    @gagnonanthony
    gagnonanthony committed Sep 18, 2023
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  4. change basis params

    @gagnonanthony
    gagnonanthony committed Sep 18, 2023
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  5. commit on trk option

    @gagnonanthony
    gagnonanthony committed Sep 18, 2023
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  6. adding commit_on_trk process

    @gagnonanthony
    gagnonanthony committed Sep 18, 2023
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Commits on Sep 20, 2023

  1. fix metrics channel

    @gagnonanthony
    gagnonanthony committed Sep 20, 2023
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Commits on Oct 25, 2023

  1. improved usage and docstring + CI

    @gagnonanthony
    gagnonanthony committed Oct 25, 2023
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  2. added CI

    @gagnonanthony
    gagnonanthony committed Oct 25, 2023
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Commits on Oct 26, 2023

  1. Added freesurferflow

    @gagnonanthony
    gagnonanthony committed Oct 26, 2023
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  2. fix freesurfer, add docker and singularity files

    @gagnonanthony
    gagnonanthony committed Oct 26, 2023
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  3. fix test

    @gagnonanthony
    gagnonanthony committed Oct 26, 2023
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  4. test

    @gagnonanthony
    gagnonanthony committed Oct 26, 2023
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  5. try fix space issues on runners

    @gagnonanthony
    gagnonanthony committed Oct 26, 2023
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Commits on Oct 27, 2023

  1. fix singularity and back to nextflow testing

    @gagnonanthony
    gagnonanthony committed Oct 27, 2023
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  2. fix fast in docker and atlases

    @gagnonanthony
    gagnonanthony committed Oct 27, 2023
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Commits on Oct 30, 2023

  1. fixing utils download in container

    @gagnonanthony
    gagnonanthony committed Oct 30, 2023
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  2. fix typos and bindings

    @gagnonanthony
    gagnonanthony committed Oct 30, 2023
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Commits on Nov 1, 2023

  1. explicited usage files, minor fix, improved ci

    @gagnonanthony
    gagnonanthony committed Nov 1, 2023
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  2. fix workspace in CI

    @gagnonanthony
    gagnonanthony committed Nov 1, 2023
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  3. complete docs, logs and links between flows

    @gagnonanthony
    gagnonanthony committed Nov 1, 2023
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  4. add t1 as output

    @gagnonanthony
    gagnonanthony committed Nov 1, 2023
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  5. fix typos

    @gagnonanthony
    gagnonanthony committed Nov 1, 2023
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  6. fix links

    @gagnonanthony
    gagnonanthony committed Nov 1, 2023
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  7. change image filename

    @gagnonanthony
    gagnonanthony committed Nov 1, 2023
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Commits on Nov 2, 2023

  1. change output structure, readme and containers

    @gagnonanthony
    gagnonanthony committed Nov 2, 2023
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Commits on Nov 3, 2023

  1. fix lausanne atlas

    @gagnonanthony
    gagnonanthony committed Nov 3, 2023
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Commits on Nov 6, 2023

  1. fix output structure

    @gagnonanthony
    gagnonanthony committed Nov 6, 2023
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  2. reverting back to $task.process for output

    @gagnonanthony
    gagnonanthony committed Nov 6, 2023
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  3. fix typo

    @gagnonanthony
    gagnonanthony committed Nov 6, 2023
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  4. explicitly outputting and selecting altases

    @gagnonanthony
    gagnonanthony committed Nov 6, 2023
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Commits on Nov 14, 2023

  1. bumping scilus 1.5 -> 1.6 in container

    @gagnonanthony
    gagnonanthony committed Nov 14, 2023
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Commits on Dec 5, 2023

  1. add priors + change commit process

    @gagnonanthony
    gagnonanthony committed Dec 5, 2023
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Commits on Dec 6, 2023

  1. add priors profile

    @gagnonanthony
    gagnonanthony committed Dec 6, 2023
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  2. fix typos and minor bugs

    @gagnonanthony
    gagnonanthony committed Dec 6, 2023
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Commits on Dec 13, 2023

  1. add fastsurfer option + BN child atlas

    @gagnonanthony
    gagnonanthony committed Dec 13, 2023
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  2. fix typo

    @gagnonanthony
    gagnonanthony committed Dec 13, 2023
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  3. fix commit with priors

    @gagnonanthony
    gagnonanthony committed Dec 13, 2023
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  4. fix typo in USAGE

    @gagnonanthony
    gagnonanthony committed Dec 13, 2023
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Commits on Dec 14, 2023

  1. change .gca atlas to match 7.3.2 version

    @gagnonanthony
    gagnonanthony committed Dec 14, 2023
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Commits on Dec 22, 2023

  1. updated slurm time and memory constraints

    @gagnonanthony
    gagnonanthony committed Dec 22, 2023
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Commits on Jan 4, 2024

  1. fix mem in freesurfer + queuesize and maxforks

    @gagnonanthony
    gagnonanthony committed Jan 4, 2024
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Commits on Mar 22, 2024

  1. Fix small typos

    @gagnonanthony
    gagnonanthony committed Mar 22, 2024
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