[FIX] minor changes

scilus · May 22, 2024 · c53756e · c53756e
1 parent fcd67ec
commit c53756e
Show file tree

Hide file tree

Showing 5 changed files with 4 additions and 6 deletions.
diff --git a/modules/nf-scil/tractogram/resample/main.nf b/modules/nf-scil/tractogram/resample/main.nf
@@ -10,7 +10,7 @@ process TRACTOGRAM_RESAMPLE {
         tuple val(meta), path(tractograms)
 
     output:
-        tuple val(meta), path("*_resampled*.trk")       , emit: tractograms
+        tuple val(meta), path("*_resampled.trk")       , emit: tractograms
         path "versions.yml"                             , emit: versions
 
     when:

diff --git a/modules/nf-scil/tractogram/resample/meta.yml b/modules/nf-scil/tractogram/resample/meta.yml
@@ -41,7 +41,7 @@ output:
       type: file
       description: |
         Resampled tractograms.
-      pattern: "*.{trk}"
+      pattern: "*_resampled.trk"
 
 authors:
   - "@gagnonanthony"

diff --git a/modules/nf-scil/tractogram/resample/tests/main.nf.test b/modules/nf-scil/tractogram/resample/tests/main.nf.test
@@ -40,8 +40,6 @@ nextflow_process {
             }
         }
         then {
-            //println file(process.out.tractograms.get(0).get(1).toList().get(0))
-            //println file(process.out.tractograms.get(0).get(1).toList().get(1))
             assertAll(
                 { assert process.success },
                 { assert snapshot(

diff --git a/modules/nf-scil/tractogram/resample/tests/nextflow_centroid.config b/modules/nf-scil/tractogram/resample/tests/nextflow_centroid.config
@@ -1,6 +1,6 @@
 process {
+    publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
     withName: "TRACTOGRAM_RESAMPLE" {
-        publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
         ext.nb_points = 10
     }
 }
diff --git a/modules/nf-scil/tractogram/resample/tests/nextflow_tractogram.config b/modules/nf-scil/tractogram/resample/tests/nextflow_tractogram.config
@@ -1,6 +1,6 @@
 process {
+    publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
     withName: "TRACTOGRAM_RESAMPLE" {
-        publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
         ext.never_upsample = true
         ext.nb_streamlines = 5000
         ext.seed = 44