Merge pull request #897 from AlexVCaron/fix/bad_workflow_ref #26

	name: Scilpy test suite

	on:
	push:
	branches:
	- master
	pull_request:
	branches:
	- master

	concurrency:
	group: ${{ github.workflow }}-${{ github.event.pull_request.number \|\| github.ref }}
	cancel-in-progress: true

	env:
	MPLBACKEND: agg
	OPENBLAS_NUM_THREADS: 1

	jobs:
	test:
	runs-on: scilus-runners
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4.1.1

	- name: Fetch python version from repository
	id: python-selector
	run: echo "python-version=$(cat .python-version)" >> $GITHUB_OUTPUT

	- name: Set up Python for Scilpy
	uses: actions/setup-python@v5.0.0
	with:
	python-version: ${{ steps.python-selector.outputs.python-version }}
	cache: 'pip'

	- name: Install non-python dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y \
	build-essential \
	curl \
	git \
	libblas-dev \
	liblapack-dev \
	libfreetype6-dev

	- name: Install Scilpy
	run: \|
	python -m pip install --upgrade pip setuptools wheel
	python -m pip install -e .

	- name: Run tests
	run: \|
	export C_INCLUDE_PATH=$pythonLocation/include/python${{ steps.python-selector.outputs.python-version }}:$C_INCLUDE_PATH
	pytest --cov-report term-missing:skip-covered

	- name: Upload coverage reports to Codecov
	uses: codecov/codecov-action@v3
	env:
	CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
	with:
	flags: unittests
	name: scilpy-unittests-${{ github.run_id }}
	verbose: true
	directory: .test_reports/
	fail_ci_if_error: true
	root_dir: $GITHUB_WORKSPACE/scilpy/

	- name: Upload test reports and coverage to artifacts
	uses: actions/upload-artifact@v4.3.1
	with:
	name: test-reports
	path: \|
	.test_reports/*

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