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Merge pull request #205 from astrophpeter/data-init
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,54 +1,68 @@ | ||
| #!/bin/bash | ||
| set -e | ||
|
|
||
| cd /mnt/data | ||
|
|
||
| mkdir -p cutout_cdn | ||
| mkdir -p sed_output | ||
| mkdir -p ghost_data | ||
| mkdir -p ghost_output | ||
| mkdir -p tns_staging | ||
| mkdir -p transmission | ||
| mkdir -p dustmaps | ||
| mkdir -p fsps | ||
| mkdir -p sbipp | ||
| mkdir -p sbipp_phot | ||
| mkdir -p sbi_training_sets | ||
| # Ensure data root directory is configured | ||
| if [[ "${DATA_ROOT_DIR}x" == "x" ]]; then | ||
| echo "ERROR: DATA_ROOT_DIR environment variable must not be empty. Aborting." | ||
| exit 1 | ||
| fi | ||
|
|
||
| mkdir -p /data/ | ||
| cd "${DATA_ROOT_DIR}" | ||
|
|
||
| # The creation of symlinks should error if there is a non-symlink | ||
| # file or folder where the symlink should be. | ||
| if [[ ! -L "/data/cutout_cdn" ]]; then | ||
| ln -s /mnt/data/cutout_cdn /data/cutout_cdn | ||
| if [[ ! -L "${CUTOUT_ROOT}" ]]; then | ||
| mkdir -p "${DATA_ROOT_DIR}"/cutout_cdn | ||
| mkdir -p "$(dirname "${CUTOUT_ROOT}")" | ||
| ln -s "${DATA_ROOT_DIR}/cutout_cdn" "${CUTOUT_ROOT}" | ||
| fi | ||
| if [[ ! -L "/data/sed_output" ]]; then | ||
| ln -s /mnt/data/sed_output /data/sed_output | ||
| if [[ ! -L "${SED_OUTPUT_ROOT}" ]]; then | ||
| mkdir -p "${DATA_ROOT_DIR}"/sed_output | ||
| mkdir -p "$(dirname "${SED_OUTPUT_ROOT}")" | ||
| ln -s "${DATA_ROOT_DIR}/sed_output" "${SED_OUTPUT_ROOT}" | ||
| fi | ||
| if [[ ! -L "/data/ghost_data" ]]; then | ||
| ln -s /mnt/data/ghost_data /data/ghost_data | ||
| if [[ ! -L "${GHOST_DATA_ROOT}" ]]; then | ||
| mkdir -p "${DATA_ROOT_DIR}"/ghost_data | ||
| mkdir -p "$(dirname "${GHOST_DATA_ROOT}")" | ||
| ln -s "${DATA_ROOT_DIR}/ghost_data" "${GHOST_DATA_ROOT}" | ||
| fi | ||
| if [[ ! -L "/ghost_output" ]]; then | ||
| ln -s /mnt/data/ghost_output /ghost_output | ||
| if [[ ! -L "${GHOST_OUTPUT_ROOT}" ]]; then | ||
| mkdir -p "${DATA_ROOT_DIR}"/ghost_output | ||
| mkdir -p "$(dirname "${GHOST_OUTPUT_ROOT}")" | ||
| ln -s "${DATA_ROOT_DIR}/ghost_output" "${GHOST_OUTPUT_ROOT}" | ||
| fi | ||
| if [[ ! -L "/tns_staging" ]]; then | ||
| ln -s /mnt/data/tns_staging /tns_staging | ||
| if [[ ! -L "${TNS_STAGING_ROOT}" ]]; then | ||
| mkdir -p "${DATA_ROOT_DIR}"/tns_staging | ||
| mkdir -p "$(dirname "${TNS_STAGING_ROOT}")" | ||
| ln -s "${DATA_ROOT_DIR}/tns_staging" "${TNS_STAGING_ROOT}" | ||
| fi | ||
| if [[ ! -L "/transmission" ]]; then | ||
| ln -s /mnt/data/transmission /transmission | ||
| if [[ ! -L "${TRANSMISSION_CURVES_ROOT}" ]]; then | ||
| mkdir -p "${DATA_ROOT_DIR}"/transmission | ||
| mkdir -p "$(dirname "${TRANSMISSION_CURVES_ROOT}")" | ||
| ln -s "${DATA_ROOT_DIR}/transmission" "${TRANSMISSION_CURVES_ROOT}" | ||
| fi | ||
| if [[ ! -L "/dustmaps" ]]; then | ||
| ln -s /mnt/data/dustmaps /dustmaps | ||
| if [[ ! -L "${DUSTMAPS_DATA_ROOT}" ]]; then | ||
| mkdir -p "${DATA_ROOT_DIR}"/dustmaps | ||
| mkdir -p "$(dirname "${DUSTMAPS_DATA_ROOT}")" | ||
| ln -s "${DATA_ROOT_DIR}/dustmaps" "${DUSTMAPS_DATA_ROOT}" | ||
| fi | ||
| if [[ ! -L "/fsps" ]]; then | ||
| ln -s /mnt/data/fsps /fsps | ||
| if [[ ! -L "${SPS_HOME}" ]]; then | ||
| mkdir -p "${DATA_ROOT_DIR}"/fsps | ||
| mkdir -p "$(dirname "${SPS_HOME}")" | ||
| ln -s "${DATA_ROOT_DIR}/fsps" "${SPS_HOME}" | ||
| fi | ||
| if [[ ! -L "/sbipp" ]]; then | ||
| ln -s /mnt/data/sbipp /sbipp | ||
| if [[ ! -L "${SBIPP_ROOT}" ]]; then | ||
| mkdir -p "${DATA_ROOT_DIR}"/sbipp | ||
| mkdir -p "$(dirname "${SBIPP_ROOT}")" | ||
| ln -s "${DATA_ROOT_DIR}/sbipp" "${SBIPP_ROOT}" | ||
| fi | ||
| if [[ ! -L "/sbipp_phot" ]]; then | ||
| ln -s /mnt/data/sbipp_phot /sbipp_phot | ||
| if [[ ! -L "${SBIPP_PHOT_ROOT}" ]]; then | ||
| mkdir -p "${DATA_ROOT_DIR}"/sbipp_phot | ||
| mkdir -p "$(dirname "${SBIPP_PHOT_ROOT}")" | ||
| ln -s "${DATA_ROOT_DIR}/sbipp_phot" "${SBIPP_PHOT_ROOT}" | ||
| fi | ||
| if [[ ! -L "/data/sbi_training_sets" ]]; then | ||
| ln -s /mnt/data/sbi_training_sets /data/sbi_training_sets | ||
| if [[ ! -L "${SBI_TRAINING_ROOT}" ]]; then | ||
| mkdir -p "${DATA_ROOT_DIR}"/sbi_training_sets | ||
| mkdir -p "$(dirname "${SBI_TRAINING_ROOT}")" | ||
| ln -s "${DATA_ROOT_DIR}/sbi_training_sets" "${SBI_TRAINING_ROOT}" | ||
| fi |
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