Scipion template plugin

This is a template plugin for scipion

Steps to adapt this plugin

IMPORTANT: To simplify the instructions all the commands would refer to an hypothetical new plugin name called "coolem". Note that you must replace "coolem" by your plugin name.

Clone it:

git clone https://github.com/scipion-em/scipion-em-template.git scipion-em-coolem

Reset the git repo

cd scipion-em-coolem
rm -rf .git
git init

Empty CHANGES.txt

rm CHANGES.txt && touch CHANGES.txt

Rename "myplugin" to coolem (IDE might help here)

mv myplugin coolem

Tidy up imports

Tip 1: IDE refactrization should rename at once the classes and the imports Tip 2: Search in your IDE for "myplugin" and replace by "coolem"

coolem/protocols/protocol_hello_world.py:

class MyPluginPrefixHelloWorld --> class CoolemPrefixHelloWorld

coolem/protocol/__init__.py:

from .protocol_hello_world import MyPluginPrefixHelloWorld --> from .protocol_hello_world import CoolemPrefixHelloWorld

coolem/wizards/wizard_hello_world.py:

_targets = [(MyPluginPrefixHelloWorld, ['message'])] --> _targets = [(CoolemPrefixHelloWorld, ['message'])] class MyPluginPrefixHelloWorldWizard --> class CoolemPrefixHelloWorldWizard

coolem/wizards/__init__.py:

from .wizard_hello_world import MyPluginPrefixHelloWorldWizard --> from .wizard_hello_world import CoolemPrefixHelloWorldWizard

protcocols.conf: rename MyPluginPrefixHelloWorld --> CoolemPrefixHelloWorld

setup.py:

update almost all values: name, description, ...

be sure to update package data

  package_data={  # Optional
     'coolem': ['icon.png', 'protocols.conf'],
  }

and the entry point

entry_points={
    'pyworkflow.plugin': 'coolem = coolem'
}

Install the plugin in devel mode

scipion3 installp -p /home/me/scipion-em-coolem --devel

TIP: If installation fails, you can access pip options like:

scipion3 python -m pip ... (list, install, uninstall)

Customize it

replace icon.png with your logo. update the bibtex.py with your reference.

Get rid of this content and keep the readme informative