Skip to content
@scipion-em

scipion-em

Official repository for Scipion plugins

Pinned Loading

  1. scipion-pyworkflow Public

    Underlying pyworkflow module for the Scipion framework

    Python 6 6

  2. scipion-em Public

    Base Scipion plugin defining objects and protocols for EM

    Python 9 5

  3. scipion-app Public

    Base Scipion application that is based on pyworkflow and all extension plugins

    Python 7 2

  4. scipion-installer Public

    Scipion app installer for version 3. Compatible with python2 and python3. It creates virtualenv or conda environments.

    Python 3 2

  5. docs Public

    Scipion documentation repository

    Python 1 7

  6. scipion-em-tomo Public

    Base tomography Scipion plugin with data model definition

    Python 9 5

Repositories

Showing 10 of 111 repositories
  • scipion-em-facilities Public

    Plugin for Cryo-EM facilities to be used within Scipion framework

    Python 0 GPL-3.0 1 6 3 Updated Apr 7, 2025
  • docs Public

    Scipion documentation repository

    Python 1 GPL-3.0 7 2 2 Updated Apr 7, 2025
  • scipion-em-tomo Public

    Base tomography Scipion plugin with data model definition

    Python 9 GPL-3.0 5 39 (1 issue needs help) 1 Updated Apr 4, 2025
  • scipion-em-kiharalab Public

    Utilities from Kihara Lab

    Python 0 GPL-3.0 1 0 2 Updated Apr 3, 2025
  • scipion-em-dynamo Public

    Dynamo tomography plugin for Scipion

    Python 1 GPL-3.0 0 4 1 Updated Apr 3, 2025
  • scipion-em-reliontomo Public

    Plugin to use Relion tomography programs within the Scipion framework

    Python 2 GPL-3.0 1 5 0 Updated Apr 3, 2025
  • scipion-em-membrain Public

    Plugin to run MemBrain software within Scipion

    Python 0 GPL-3.0 0 0 0 Updated Apr 2, 2025
  • metadata-viewer Public

    Generic metadata viewer

    Python 0 GPL-3.0 0 3 0 Updated Apr 1, 2025
  • scipion-em-tomosegmemtv Public

    Scipion plugin for segmentation and annotation of membranes (with tomoSegmenTV and membSegAnnotator)

    Python 4 GPL-3.0 0 2 0 Updated Mar 31, 2025
  • Python 0 GPL-3.0 0 3 0 Updated Mar 31, 2025