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show avg and std of all data not only the selected #50

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merged 3 commits into from
Jun 4, 2021
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rmarabini
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@rmarabini rmarabini requested a review from mmmtnez June 1, 2021 11:59
@mmmtnez
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mmmtnez commented Jun 1, 2021

Hi Roberto,

only three things to finish "definitvely":

1.- In viewer_search_fit.py line 72: Fix typo "around" instead of "arround", and replace "PDB" by "atomic structure".
2.- In viewer_search_fit.py line 74: Replace "PDB" by "atomic structure".
3.- In protocols.conf, move PhenixProtSearchFit to Flexible fitting menu section. The new file should be this one:

[PROTOCOLS]
Protocols SPA = [
{"tag": "section", "text": "Tools", "openItem": "False", "children": [
{"tag": "protocol_group", "text": "Calculators", "openItem": "False", "children": [
{"tag": "protocol", "value": "PhenixProtRunSuperposePDBs", "text": "default"}
]}
]}]
Model building = [
{"tag": "section", "text": "Imports", "icon": "bookmark.png", "children": [
]},
{"tag": "section", "text": "Preprocess map", "icon": "bookmark.png", "children": [
]},
{"tag": "section", "text": "Initial model", "icon": "bookmark.png", "children": [
]},
{"tag": "section", "text": "Rigid fitting", "icon": "bookmark.png", "children": [
{"tag": "protocol", "value": "PhenixProtRunDockInMap", "text": "default"}
]},
{"tag": "section", "text": "Flexible fitting", "icon": "bookmark.png", "children": [
{"tag": "protocol", "value": "PhenixProtRunRSRefine", "text": "default"},
{"tag": "protocol", "value": "PhenixProtSearchFit", "text": "default"}
]},
{"tag": "section", "text": "Validation", "icon": "bookmark.png", "children": [
{"tag": "protocol", "value": "PhenixProtRunEMRinger", "text": "default"},
{"tag": "protocol", "value": "PhenixProtRunMolprobity", "text": "default"},
{"tag": "protocol", "value": "PhenixProtRunValidationCryoEM", "text": "default"}
]},
{"tag": "section", "text": "Tools-Calculators", "icon": "bookmark.png", "children": [
{"tag": "protocol", "value": "PhenixProtRunSuperposePDBs", "text": "default"}
]},
{"tag": "section", "text": "Others", "icon": "bookmark.png", "children": [
]}
]

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sonarcloud bot commented Jun 4, 2021

Kudos, SonarCloud Quality Gate passed!

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

0.0% 0.0% Coverage
0.0% 0.0% Duplication

@mmmtnez mmmtnez merged commit afd027a into devel Jun 4, 2021
@mmmtnez mmmtnez deleted the rm_fix_plot branch June 4, 2021 17:37
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2 participants