8 scipion3 mm alphafold #64
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…buildDockPredictedAlphaFold2Model
…lightly modified the respective viewer
…g menu) and PhenixProtRebuildDockPredictedAlphaFold2Model and PhenixProtDockAndRebuildAlphaFold2Model (to Flexible Fitting menu)
…BvalueField, added WARNING in case the protocol fails
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Plugin updated with four protocols and tests to handle alphafold model prediction in scipion (process, dock, rebuild and doc--and-rebuild at the same time):
Tests:
scipion3 tests phenix.tests.test_phenix_alphafold.TestCProtProcessDockBuildPredictedAlphaFold;
scipion3 tests phenix.tests.test_phenix_alphafold.TestBProtProcessDockBuildPredictedAlphaFold;
scipion3 tests phenix.tests.test_phenix_alphafold.TestAProtProcessDockBuildPredictedAlphaFold
In addition I have fixed a problem with the path in the dock in map phenix protocoll.
Test:
scipion3 tests phenix.tests.test_protocol_dock_in_map.TestProtDockInMap
WARNING: Use phenix version 1.20