Paper: Codebraid Preview for VS Code: Pandoc Markdown Preview with Jupyter Kernels

papers/geoffrey_poore/build_rst_from_md.bat

@@ -0,0 +1 @@
+pandoc -f commonmark_x -t rst -o geoffrey_poore.rst -L filters.lua poore.md

papers/geoffrey_poore/build_rst_from_md.sh

@@ -0,0 +1 @@
+pandoc -f commonmark_x -t rst -o geoffrey_poore.rst -L filters.lua poore.md

papers/geoffrey_poore/filters.lua

@@ -0,0 +1,14 @@
+function Str(elem)
+    local startIndex, endIndex, maybeMatch = string.find(elem.text, '%[(%w+)%]')
+    if maybeMatch then
+        local newInlines = pandoc.Inlines{}
+        if startIndex > 1 then
+            newInlines:insert(pandoc.Str(string.sub(elem.text, 1, startIndex-1)))
+        end
+        newInlines:insert(pandoc.RawInline('rst', ':cite:`' .. maybeMatch .. '`'))
+        if endIndex < elem.text:len() then
+            newInlines:insert(pandoc.Str(string.sub(elem.text, endIndex+1)))
+        end
+        return newInlines
+    end
+end

papers/geoffrey_poore/poore.bib

@@ -0,0 +1,110 @@
+% Encoding: UTF-8
+
+@Conference{Kluyver2016,
+  author       = {Thomas Kluyver and Benjamin Ragan-Kelley and Fernando P{\'e}rez and Brian Granger and Matthias Bussonnier and Jonathan Frederic and Kyle Kelley and Jessica Hamrick and Jason Grout and Sylvain Corlay and Paul Ivanov and Dami{\'a}n Avila and Safia Abdalla and Carol Willing},
+  title        = {{J}upyter {N}otebooks -- a publishing format for reproducible computational workflows},
+  booktitle    = {Positioning and Power in Academic Publishing: Players, Agents and Agendas},
+  year         = {2016},
+  editor       = {F. Loizides and B. Schmidt},
+  pages        = {87--90},
+  organization = {IOS Press},
+  doi          = {10.3233/978-1-61499-649-1-87},
+}
+
+@Book{Xie2015,
+  title     = {{D}ynamic {D}ocuments with {R} and knitr},
+  publisher = {{C}hapman {\&} {H}all/{CRC} {P}ress},
+  year      = {2015},
+  author    = {{Y}ihui {X}ie},
+  isbn      = {1498716962},
+}
+
+@Misc{pandoc,
+  author = {{J}ohn {M}ac{F}arlane},
+  title  = {Pandoc: a universal document converter},
+  year   = {2006--2022},
+  url    = {https://pandoc.org/},
+}
+
+@Article{jupyter,
+  author  = {Granger, Brian E. and Pérez, Fernando},
+  journal = {Computing in Science \& Engineering},
+  title   = {Jupyter: Thinking and Storytelling With Code and Data},
+  year    = {2021},
+  number  = {2},
+  pages   = {7-14},
+  volume  = {23},
+  doi     = {10.1109/MCSE.2021.3059263},
+}
+
+@Misc{nbconvert,
+  author = {{Jupyter Development Team}},
+  title  = {{nbconvert: Convert Notebooks to other formats}},
+  year   = {2015--2022},
+  url    = {https://nbconvert.readthedocs.io},
+}
+
+@Misc{jupytext,
+  author = {{M}arc {W}outs and the {J}upytext {T}eam},
+  title  = {Jupyter notebooks as {Markdown} documents, {Julia}, {Python} or {R} scripts},
+  year   = {2018--2020},
+  url    = {https://jupytext.readthedocs.io/},
+}
+
+@Misc{rmarkdown,
+  author = {{RStudio Inc.}},
+  title  = {{R Markdown}},
+  year   = {2016--2020},
+  url    = {https://rmarkdown.rstudio.com/},
+}
+
+@Misc{quarto,
+  author = {{RStudio Inc.}},
+  title  = {{Welcome to Quarto}},
+  year   = {2022},
+  url    = {https://quarto.org/},
+}
+
+@InProceedings{codebraid,
+  author    = {{G}eoffrey {M}. {P}oore},
+  booktitle = {{P}roceedings of the 18th {P}ython in {S}cience {C}onference},
+  title     = {{C}odebraid: {L}ive {C}ode in {P}andoc {M}arkdown},
+  year      = {2019},
+  editor    = {{C}hris {C}alloway and {D}avid {L}ippa and {D}illon {N}iederhut and {D}avid {S}hupe},
+  pages     = {54 -- 61},
+  doi       = {10.25080/Majora-7ddc1dd1-008},
+}
+
+@Misc{katex,
+  author = {Eisenberg, Emily and Alpert, Sophie},
+  title  = {{KaTeX: The fastest math typesetting library for the web}},
+  year   = {2022},
+  url    = {https://katex.org/},
+}
+
+@Misc{mathjax,
+  author = {MathJax},
+  title  = {{MathJax: Beautiful and accessible math in all browsers}},
+  year   = {2009--2022},
+  url    = {https://www.mathjax.org/},
+}
+
+@article{synctex,
+  title={Direct and reverse synchronization with {SyncTEX}},
+  author={Laurens, Jer{\^o}me},
+  journal={{TUGBoat}},
+  volume={29},
+  number={3},
+  pages={365--371},
+  year={2008},
+}
+
+
+@Comment{jabref-meta: databaseType:bibtex;}
+
+@Comment{jabref-meta: grouping:
+0 AllEntriesGroup:;
+1 StaticGroup:Markings\;2\;1\;\;\;\;;
+2 StaticGroup:Tachyon:6\;2\;1\;\;\;\;;
+2 StaticGroup:[Tachyon:]\;2\;1\;\;\;\;;
+}