Backport PR #3031 on branch 1.10.x (Extend benchmarks from basic tutorial)

[meeseeksmachine]

Backport PR #3031: Extend benchmarks from basic tutorial

[scverse-benchmark]

Benchmark changes

Change	Before [19a0bb8]	After [0e14441]	Ratio	Benchmark (Parameter)
-	1.32G	1.13G	0.85	preprocessing_counts.peakmem_scrublet('pbmc3k')
-	473M	406M	0.86	preprocessing_counts.peakmem_scrublet('pbmc68k_reduced')
-	11.7±0.07s	3.28±0.2s	0.28	preprocessing_counts.time_scrublet('pbmc3k')
-	2.48±0s	407±100ms	0.16	preprocessing_counts.time_scrublet('pbmc68k_reduced')
-	639M	527M	0.83	preprocessing_log.peakmem_pca('pbmc3k')

Comparison: https://github.com/scverse/scanpy/compare/19a0bb8fd3601c3b39e242ff6419fb73e59cf67a..0e14441111e310d30d8bd539062093f9b640e29c
Last changed: Tue, 14 May 2024 10:15:55 +0000

More details: https://github.com/scverse/scanpy/pull/3056/checks?check_run_id=24941793644

[codecov]

Codecov Report

Attention: Patch coverage is 69.23077% with 4 lines in your changes are missing coverage. Please review.

Project coverage is 76.27%. Comparing base (19a0bb8) to head (0e14441).

Additional details and impacted files

@@            Coverage Diff             @@
##           1.10.x    #3056      +/-   ##
==========================================
- Coverage   76.27%   76.27%   -0.01%     
==========================================
  Files         117      117              
  Lines       12799    12803       +4     
==========================================
+ Hits         9763     9766       +3     
- Misses       3036     3037       +1     

Files	Coverage Δ
scanpy/preprocessing/_highly_variable_genes.py	95.60% <100.00%> (ø)
scanpy/preprocessing/_scrublet/core.py	92.90% <100.00%> (+0.14%)	⬆️
scanpy/preprocessing/_simple.py	87.28% <100.00%> (ø)
scanpy/preprocessing/_scrublet/__init__.py	96.70% <0.00%> (-1.08%)	⬇️
scanpy/tools/_rank_genes_groups.py	94.33% <50.00%> (ø)