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Include datasets #30
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In GitLab by @grst on Mar 19, 2020, 09:24 changed the description |
In GitLab by @grst on Mar 20, 2020, 18:14 changed the description |
In GitLab by @szabogtamas on Mar 26, 2020, 10:36 If we want to make some of the datasets available online, https://cyverse.org/data-store might be an option. Especially, if the datasets are too big for GitHub. |
In GitLab by @grst on Mar 26, 2020, 10:40 That's interesting... who's financing that? There's a hack to attach files up to 2GB to github-releases, which I would have gone for... |
In GitLab by @szabogtamas on Mar 26, 2020, 10:51 I don't know much about this background. The reason I have used it so far is that it can host data for custom tracks in UCSC genome browser |
In GitLab by @grst on Apr 6, 2020, 19:49 started downloading fastq files of the smartseq2 data... at some point we can run them though sandro's pipeline. |
Closed in favor of #198. We will have a nice BCR Smart-seq2 dataset, I don't think there is an urgent reason to add more. |
In GitLab by @grst on Mar 16, 2020, 15:08
Include demo datasets as part of the package (
sctcrpy.datasets
) similar to how it is done in scanpy.Nice datasets to include:
10x
Smartseq2
This is a prerequisite of making a nice tutorial.
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