New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add BCR example dataset #198

Closed

grst opened this issue Oct 7, 2020 · 1 comment

Collaborator

grst commented Oct 7, 2020

Possible example datasets:

King et al 10x vdj. The VDJ information is available in processed form, but the counts would need to be processed from raw FASTQ files. The dataset contains T-cells, but 10x vdj seq has only been performed for B-cells.
Maynard et al. Smart-seq2. Contains B-cells, T-cells and other immune cells.

I tend to use the second one, because,

I need to process it for another project anyway
it contains both B-cells and T-cells in the same dataset
It's smart-seq2 and we already have a 10x dataset.

grst mentioned this issue

Support for BCR #132

Closed

14 tasks

grst mentioned this issue

Include datasets #30

Closed

4 tasks

Collaborator Author

grst commented Oct 20, 2020

Maynard et al. is now available as scirpy.datasets.maynard2020().

grst closed this as completed

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment