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Improve API documentation #124

Merged
merged 21 commits into from
May 22, 2020
Merged

Improve API documentation #124

merged 21 commits into from
May 22, 2020

Commits on Apr 30, 2020

  1. Add social preview of logo.

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    grst committed Apr 30, 2020
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  2. Update docs and default parameters for clonotype_network.

    @grst
    grst committed Apr 30, 2020
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  3. Update docs for alpha diversity

    @grst
    grst committed Apr 30, 2020
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  4. Improve docs of group abundance

    @grst
    grst committed Apr 30, 2020
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  5. Update docs and refactor spectratype plot.

    @grst
    grst committed Apr 30, 2020
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  6. Improve docs and refactor vdj_usage

    @grst
    grst committed Apr 30, 2020
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  7. Refactor group abundance

    @grst
    grst committed Apr 30, 2020
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  8. Refactor spectratype

    @grst
    grst committed Apr 30, 2020
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  9. Improve docs of base plots and styling

    @grst
    grst committed Apr 30, 2020
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  10. Fix linting in vdj_usage

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    grst committed Apr 30, 2020
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Commits on May 5, 2020

  1. Set gap extend default = gap open = 11.

    @grst
    grst committed May 5, 2020
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  2. Update docs for merge_with_tcr.

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    grst committed May 5, 2020
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  3. Add autodoc class templates to resolve issue with autodoc. 

    Class methods wouldn't document themselves.
The problem seemed to be `__init__` in the
methods section.
    @grst
    grst committed May 5, 2020
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  4. WIP improve tcr dist documentation

    @grst
    grst committed May 5, 2020
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  5. WIP TCR dist documentation

    @grst
    grst committed May 5, 2020
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  6. Complete TCR dist docs

    @grst
    grst committed May 5, 2020
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Commits on May 6, 2020

  1. Improve documentation of tools

    @grst
    grst committed May 6, 2020
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  2. Add squarify to docs dependency

    @grst
    grst committed May 6, 2020
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Commits on May 14, 2020

  1. Fix that clonotype_network plot didn't respect 'basis'

    @grst
    grst committed May 14, 2020
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Commits on May 22, 2020

  1. Fix typo.

    @grst
    grst committed May 22, 2020
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  2. Adapt plot_edges to scanpy 1.5.1

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    grst committed May 22, 2020
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