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docs(external): add typing and docstrings for mrvi, remove laplace scaling #2757

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merged 14 commits into from
Apr 30, 2024

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martinkim0
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@martinkim0 martinkim0 changed the title feat(external): add mrvi docs(external): add typing and docstrings for mrvi Apr 29, 2024
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codecov bot commented Apr 29, 2024

Codecov Report

Attention: Patch coverage is 95.71429% with 3 lines in your changes are missing coverage. Please review.

Project coverage is 89.14%. Comparing base (b9fe365) to head (804bfc5).

Additional details and impacted files
@@            Coverage Diff             @@
##             mrvi    #2757      +/-   ##
==========================================
+ Coverage   89.10%   89.14%   +0.04%     
==========================================
  Files         167      167              
  Lines       14242    14232      -10     
==========================================
- Hits        12690    12687       -3     
+ Misses       1552     1545       -7     
Files Coverage Δ
src/scvi/external/mrvi/__init__.py 100.00% <100.00%> (ø)
src/scvi/external/mrvi/_module.py 97.76% <100.00%> (+3.29%) ⬆️
src/scvi/external/mrvi/_types.py 100.00% <100.00%> (ø)
src/scvi/utils/_docstrings.py 100.00% <100.00%> (ø)
src/scvi/external/mrvi/_components.py 99.13% <94.44%> (-0.03%) ⬇️
src/scvi/external/mrvi/_model.py 90.72% <96.55%> (+0.14%) ⬆️
src/scvi/external/mrvi/_utils.py 68.57% <83.33%> (-5.79%) ⬇️

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@justjhong justjhong left a comment

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Thank you so much for this!

src/scvi/external/mrvi/_module.py Outdated Show resolved Hide resolved
src/scvi/external/mrvi/_module.py Outdated Show resolved Hide resolved
@martinkim0
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Thanks @justjhong! Just removed instances of laplace and As in the code.

@martinkim0 martinkim0 changed the title docs(external): add typing and docstrings for mrvi docs(external): add typing and docstrings for mrvi, remove laplace scaling Apr 30, 2024
@martinkim0 martinkim0 merged commit f169426 into mrvi Apr 30, 2024
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@martinkim0 martinkim0 deleted the mrvi-docstrings branch April 30, 2024 22:51
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4 participants