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#' @title RNA-seq example | ||
#' @description Extract of a DESeq2 result for differential expression analysis on RNA-seq data | ||
#' @format A data frame with 300 rows and 7 variables: | ||
#' \describe{ | ||
#' \item{\code{geneName}}{genes symbols} | ||
#' \item{\code{baseMean}}{The average of the normalized count values, dividing by size factors, taken over all samples} | ||
#' \item{\code{log2FC}}{the log2 value of the Fold Change expression between two conditions} | ||
#' \item{\code{lfcSE}}{log2 Fold Change standard error (SE)} | ||
#' \item{\code{stat}}{Wald statistic} | ||
#' \item{\code{pvalue}}{Wald test p-value} | ||
#' \item{\code{padj}}{BH adjusted p-values} | ||
#'} | ||
#' @source \url{http://path.to.paper/} | ||
"RNAseq" | ||
#' | ||
#' | ||
#' | ||
#' | ||
#' @title RNA-seq example | ||
#' @description List result of the function \code{read.computeMatrix.file} used to read a matrix.gz file generated by deepTools computeMatrix function. | ||
#' @format A named list of 3 variables: | ||
#' \describe{ | ||
#' \item{\code{metadata}}{data.frame with the information gotten from the matrix_file.gz} | ||
#' \item{\code{matrix.data}}{data.frame with the scores gotten from} | ||
#' \item{\code{original.file.path}}{with full path to the original matrix_file.gz} | ||
#'} | ||
#' @source \url{http://path.to.paper/} | ||
"deeptools.matrix" | ||
#' | ||
#' | ||
#' | ||
#' | ||
#' @title CNV data results example | ||
#' @description Simulation of Copy Number Variation (CNV) analysis on a cohort of patients. | ||
#' @format A data frame with 25 rows and 9 variables: | ||
#' \describe{ | ||
#' \item{\code{geneName}}{hypothetical gene symbols} | ||
#' \item{\code{patient_1 ... patient_N}}{hypothetical patients ID} | ||
#'} | ||
#' @source Simulated data | ||
"CNV.data" |
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