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3D U-Net TensorFlow workspace for BraTS 2020 #108

Merged
merged 67 commits into from
Aug 5, 2021
Merged

3D U-Net TensorFlow workspace for BraTS 2020 #108

merged 67 commits into from
Aug 5, 2021

Commits on Jun 19, 2021

  1. 3D U-Net for BraTS

    @tonyreina
    tonyreina committed Jun 19, 2021
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Commits on Jun 20, 2021

  1. Remove

    @tonyreina
    tonyreina committed Jun 20, 2021
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  2. Update moving UNet

    @tonyreina
    tonyreina committed Jun 20, 2021
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  3. Refactoring define_model

    @tonyreina
    tonyreina committed Jun 20, 2021
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Commits on Jun 22, 2021

  1. Working copy of 3D U-Net for BraTS

    @tonyreina
    tonyreina committed Jun 22, 2021
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  2. Update data.yaml

    @tonyreina
    tonyreina committed Jun 22, 2021
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  3. Update tf_3dunet_model.py

    @tonyreina
    tonyreina committed Jun 22, 2021
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  4. Update define_model.py

    @tonyreina
    tonyreina committed Jun 22, 2021
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  5. Crop dimension, input and output dimensions

    @tonyreina
    tonyreina committed Jun 22, 2021
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  6. Update plan.yaml

    @tonyreina
    tonyreina committed Jun 22, 2021
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  7. Bug fix for num_classes

    @tonyreina
    tonyreina committed Jun 22, 2021
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  8. Merge branch 'intel:develop' into develop

    @tonyreina
    tonyreina committed Jun 22, 2021
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  9. Update README.md

    @tonyreina
    tonyreina committed Jun 22, 2021
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  10. Adding split_directory script

    @tonyreina
    tonyreina committed Jun 22, 2021
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  11. Update define_model.py

    @tonyreina
    tonyreina committed Jun 22, 2021
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  12. Update split_directory.sh

    @tonyreina
    tonyreina committed Jun 22, 2021
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  13. Update README.md

    @tonyreina
    tonyreina committed Jun 22, 2021
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  14. Update split_directory.sh

    @tonyreina
    tonyreina committed Jun 22, 2021
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  15. More parameters passed to model definition from plan.yaml

    @tonyreina
    tonyreina committed Jun 22, 2021
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  16. More parameters passed to model definition from plan.yaml

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    tonyreina committed Jun 22, 2021
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  17. Update README.md

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    tonyreina committed Jun 22, 2021
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  18. Update README.md

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    tonyreina committed Jun 22, 2021
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  19. Update README.md

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    tonyreina committed Jun 22, 2021
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  20. Update README.md

    @tonyreina
    tonyreina committed Jun 22, 2021
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  21. Update README.md

    @tonyreina
    tonyreina committed Jun 22, 2021
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  22. Update README.md

    @tonyreina
    tonyreina committed Jun 22, 2021
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  23. Update README.md

    @tonyreina
    tonyreina committed Jun 22, 2021
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  24. Update README.md

    @tonyreina
    tonyreina committed Jun 22, 2021
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  25. Update README.md

    @tonyreina
    tonyreina committed Jun 22, 2021
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  26. Update README.md

    @tonyreina
    tonyreina committed Jun 22, 2021
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  27. Update README.md

    @tonyreina
    tonyreina committed Jun 22, 2021
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  28. Update plan

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    tonyreina committed Jun 22, 2021
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  29. Updating check

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    tonyreina committed Jun 22, 2021
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  30. Updating check

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    tonyreina committed Jun 22, 2021
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  31. Bug fix in define_model. Changed some defaults

    @tonyreina
    tonyreina committed Jun 22, 2021
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  32. Update cols.yaml

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    tonyreina committed Jun 22, 2021
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  33. Update data.yaml

    @tonyreina
    tonyreina committed Jun 22, 2021
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  34. Update plan.yaml

    @tonyreina
    tonyreina committed Jun 22, 2021
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  35. Modifiying data directory

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    tonyreina committed Jun 22, 2021
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Commits on Jun 23, 2021

  1. Update tasks_fast_estimator.yaml

    @tonyreina
    tonyreina committed Jun 23, 2021
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Commits on Jun 24, 2021

  1. Update tf_brats_dataloader.py

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    tonyreina committed Jun 24, 2021
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  2. Update plan.yaml

    @tonyreina
    tonyreina committed Jun 24, 2021
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  3. Possible bug with db_stored_rounds. If it is 1, then it causes error … 

    …on second round because graph cannot be found. Also probably want to check the input to make sure it is within a good range (e.g. max(2, db_stored_rounds) )
    @tonyreina
    tonyreina committed Jun 24, 2021
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  4. Update tf_3dunet_model.py

    @tonyreina
    tonyreina committed Jun 24, 2021
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  5. Update __init__.py

    @tonyreina
    tonyreina committed Jun 24, 2021
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  6. Update tf_brats_dataloader.py

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  7. _init__.py updated

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    tonyreina committed Jun 24, 2021
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  8. _init__.py updated

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    tonyreina committed Jun 24, 2021
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  9. Trying to get __init__ to work

    @tonyreina
    tonyreina committed Jun 24, 2021
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  10. Missing files

    @tonyreina
    tonyreina committed Jun 24, 2021
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  11. Update test_hello_federation.sh

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    tonyreina committed Jun 24, 2021
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  12. Update runner_keras.py

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    tonyreina committed Jun 24, 2021
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  13. Update runner_keras.py

    @tonyreina
    tonyreina committed Jun 24, 2021
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Commits on Jun 27, 2021

  1. Flake8 fixes

    @tonyreina
    tonyreina committed Jun 27, 2021
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  2. Merge branch 'develop' of github.com:tonyreina/openfl into develop

    @tonyreina
    tonyreina committed Jun 27, 2021
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  3. Update cert check on collaborator

    @tonyreina
    tonyreina committed Jun 27, 2021
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Commits on Jul 6, 2021

  1. Merge branch 'intel:develop' into develop

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    tonyreina committed Jul 6, 2021
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Commits on Jul 7, 2021

  1. Flake8 fixes

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    tonyreina committed Jul 7, 2021
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  2. Merge branch 'intel:develop' into develop

    @tonyreina
    tonyreina committed Jul 7, 2021
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  3. Flake8

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    tonyreina committed Jul 7, 2021
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Commits on Jul 8, 2021

  1. Requested changes: tensorflow->tf; add check for existing directory; … 

    …self.numFiles->self.numfiles
    @tonyreina
    tonyreina committed Jul 8, 2021
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Commits on Jul 12, 2021

  1. Adding error exception if no BraTS files are found.

    @tonyreina
    tonyreina committed Jul 12, 2021
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  2. Merge branch 'intel:develop' into develop

    @tonyreina
    tonyreina committed Jul 12, 2021
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  3. Adding error exception if no BraTS files are found.

    @tonyreina
    tonyreina committed Jul 12, 2021
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Commits on Jul 13, 2021

  1. Bash shell correction for shard directories.

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    tonyreina committed Jul 13, 2021
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Commits on Aug 4, 2021

  1. Merge branch 'develop' into tonyreina:develop

    @itrushkin
    itrushkin committed Aug 4, 2021
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Commits on Aug 5, 2021

  1. Update test_hello_federation.sh

    @tonyreina
    tonyreina committed Aug 5, 2021
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