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[FEATURE] Call SVs in short reads via the CIGAR string and SA tag #27

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Irallia opened this issue Aug 7, 2020 · 1 comment · Fixed by #175
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[FEATURE] Call SVs in short reads via the CIGAR string and SA tag #27

Irallia opened this issue Aug 7, 2020 · 1 comment · Fixed by #175
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Irallia commented Aug 7, 2020

Given a BAM file for short reads call small deletions covered within the CIGAR sting.
@rrahn rrahn transferred this issue from seqan/product_backlog Oct 9, 2020
@Irallia Irallia changed the title Find Deletions in short reads [FEATURE] Call Deletions in short reads via the CIGAR string Oct 20, 2020
This was referenced Oct 20, 2020
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@Irallia Irallia closed this as completed Mar 30, 2021
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@Irallia Irallia changed the title [FEATURE] Call Deletions in short reads via the CIGAR string [FEATURE] Call SVs in short reads via the CIGAR string Mar 30, 2021
@Irallia Irallia reopened this Mar 30, 2021
@Irallia Irallia changed the title [FEATURE] Call SVs in short reads via the CIGAR string [FEATURE] Call SVs in short reads via the CIGAR string and SA tag Oct 25, 2021
@Irallia Irallia mentioned this issue Oct 25, 2021
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@Irallia Irallia self-assigned this Oct 25, 2021
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[FEATURE] handle short read data Irallia/iGenVar
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