[FEATURE] handle short read data #175
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@@ Coverage Diff @@
## master #175 +/- ##
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+ Coverage 96.95% 97.09% +0.14%
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Files 19 19
Lines 853 862 +9
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+ Hits 827 837 +10
+ Misses 26 25 -1
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Signed-off-by: Lydia Buntrock <lydia.buntrock@fu-berlin.de>
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Signed-off-by: Lydia Buntrock <lydia.buntrock@fu-berlin.de>
Signed-off-by: Lydia Buntrock <lydia.buntrock@fu-berlin.de>
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Signed-off-by: Lydia Buntrock <lydia.buntrock@fu-berlin.de>
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Resolves #27
We use cigar and split read method for short reads aswell.
I added a new test case for this (combination of short and long reads)
I also found a small mistake in the paired end SAM file, which gets fixed aswell.