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@f-heeger Look at it, it's a really tiny diff :)
Can you verify that it fixes your problem? [note that indexes from lambda-next branch are incompatible to 1.9.2's]
I get a segfault when I run blastn mode with a empty query file. In default mode I get a correct error message.
To reproduce (with attached input files):
I get this output:
test.zip
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