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Using less space during construction #211

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merged 5 commits into from
May 9, 2023

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SGSSGene
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@SGSSGene SGSSGene commented May 5, 2023

This updates the fmindex collection, which now uses less space, when constructing fm-indices

SGSSGene and others added 3 commits May 3, 2023 16:41
- This also changes the way that a search with an reversed index is
working, so no reversing of the text is required anymore.

- Requires to set the numbers of thread used for suffix array
  construction.
Co-authored-by: Hannes Hauswedell <h2+github.com@fsfe.org>
@SGSSGene SGSSGene force-pushed the fix/less_space_construction branch from dc1c1c7 to 2196690 Compare May 8, 2023 08:57
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h-2 commented May 8, 2023

@SGSSGene can we merge this from your POV?

@SGSSGene SGSSGene requested a review from h-2 May 9, 2023 08:03
@SGSSGene SGSSGene marked this pull request as ready for review May 9, 2023 08:03
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SGSSGene commented May 9, 2023

Yes, this is good to go. if this PR is being merged, PR 208 - multithreading can also be closed, since this one includes it.

@SGSSGene SGSSGene force-pushed the fix/less_space_construction branch from 3e5c65e to d8286ae Compare May 9, 2023 08:59
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h-2 commented May 9, 2023

Ah, I pushed the commits to the wrong branch of yours, but I see you have included them here now!

@sarahet sarahet merged commit 2453f18 into seqan:lambda3 May 9, 2023
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3 participants