[MISC] Remove compression for HIBF #494
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Coverage | |
on: | |
push: | |
branches: | |
- 'main' | |
pull_request: | |
types: | |
- unlabeled | |
workflow_dispatch: | |
concurrency: | |
group: coverage-${{ github.event.pull_request.number || github.ref }} | |
cancel-in-progress: false | |
env: | |
CMAKE_VERSION: 3.18.4 | |
SHARG_NO_VERSION_CHECK: 1 | |
TZ: Europe/Berlin | |
defaults: | |
run: | |
shell: bash -Eeuxo pipefail {0} | |
jobs: | |
build: | |
name: ${{ matrix.name }} | |
runs-on: ubuntu-22.04 | |
timeout-minutes: 120 | |
if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' || github.event.label.name == 'lint' | |
strategy: | |
fail-fast: false | |
matrix: | |
include: | |
- name: "gcc12" | |
cxx: "g++-12" | |
cc: "gcc-12" | |
build: coverage | |
build_type: Coverage | |
cxx_flags: "-std=c++23" | |
steps: | |
# How many commits do we need to fetch to also fetch the branch point? | |
- name: Get fetch depth | |
id: fetch_depth | |
run: echo "depth=$(( ${{ github.event.pull_request.commits }} + 2 ))" >> $GITHUB_OUTPUT | |
- name: Checkout | |
uses: actions/checkout@v3 | |
with: | |
path: raptor | |
fetch-depth: ${{ steps.fetch_depth.outputs.depth }} | |
submodules: true | |
- name: Add package source | |
run: bash ./raptor/lib/seqan3/.github/workflows/scripts/configure_apt.sh | |
- name: Install CMake | |
run: bash ./raptor/lib/seqan3/.github/workflows/scripts/install_cmake.sh | |
- name: Install ccache | |
run: sudo apt-get install --yes ccache | |
- name: Install compiler ${{ matrix.cxx }} | |
run: sudo apt-get install --yes ${{ matrix.cxx }} | |
- name: Install gcovr | |
env: | |
CC: ${{ matrix.cc }} | |
run: | | |
sudo update-alternatives --install /usr/bin/gcov gcov /usr/bin/${CC/gcc/gcov} 100 | |
pip install gcovr==5.2 | |
- name: Load ccache | |
uses: actions/cache@v3 | |
with: | |
path: .ccache | |
key: ${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.ref }}-${{ github.run_number }} | |
# Restoring: From current branch, otherwise from base branch, otherwise from any branch. | |
restore-keys: | | |
${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.ref }} | |
${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.base_ref }} | |
${{ runner.os }}-${{ matrix.name }}-ccache- | |
- name: Tool versions | |
run: | | |
env cmake --version | |
env ${{ matrix.cxx }} --version | |
- name: Configure tests | |
env: | |
CXX: ${{ matrix.cxx }} | |
CC: ${{ matrix.cc }} | |
run: | | |
mkdir build | |
cd build | |
cmake ../raptor/test/${{ matrix.build }} -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} \ | |
-DCMAKE_CXX_FLAGS="${{ matrix.cxx_flags }} -Wno-interference-size" \ | |
-DRAPTOR_NATIVE_BUILD=OFF | |
make -j2 gtest_build | |
- name: Build tests | |
env: | |
CCACHE_BASEDIR: ${{ github.workspace }} | |
CCACHE_DIR: ${{ github.workspace }}/.ccache | |
CCACHE_COMPRESS: true | |
CCACHE_COMPRESSLEVEL: 12 | |
CCACHE_MAXSIZE: 525M | |
CCACHE_IGNOREOPTIONS: "-fprofile-abs-path" | |
run: | | |
ccache -z | |
cd build | |
make -k -j2 | |
ccache -sv | |
- name: Run tests | |
run: | | |
cd build | |
ctest . -j2 --output-on-failure | |
- name: Generate coverage report | |
run: | | |
gcovr --gcov-executable ${{ github.workspace }}/raptor/lib/seqan3/.github/workflows/scripts/gcov.sh \ | |
--root ${{ github.workspace }}/raptor/test/coverage \ | |
${{ github.workspace }}/build \ | |
--filter ${{ github.workspace }}/raptor/include \ | |
--filter ${{ github.workspace }}/raptor/src \ | |
--exclude-lines-by-pattern '^\s*$' \ | |
--exclude-lines-by-pattern '^\s*};$' \ | |
--exclude-lines-by-pattern '^.*GCOVR_EXCL_LINE.*$' \ | |
--exclude-unreachable-branches \ | |
--exclude-throw-branches \ | |
-j 2 \ | |
--xml \ | |
--output ${{ github.workspace }}/build/coverage_report.xml | |
- name: Submit coverage report | |
id: submission1 | |
uses: codecov/codecov-action@v3 | |
continue-on-error: true | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
files: ${{ github.workspace }}/build/coverage_report.xml | |
root_dir: ${{ github.workspace }}/raptor | |
fail_ci_if_error: true | |
# When running on a PR, the token is not available. Because of the token-less upload, GitHub API rate limits apply | |
# and the upload may fail. | |
- name: Wait before retrying submission | |
if: steps.submission1.outcome == 'failure' | |
run: sleep 15 | |
- name: Retry submission | |
id: submission2 | |
uses: codecov/codecov-action@v3 | |
if: steps.submission1.outcome == 'failure' | |
continue-on-error: true | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
files: ${{ github.workspace }}/build/coverage_report.xml | |
root_dir: ${{ github.workspace }}/raptor | |
fail_ci_if_error: true | |
- name: Wait before retrying submission | |
if: steps.submission2.outcome == 'failure' | |
run: sleep 15 | |
- name: Retry submission | |
if: steps.submission2.outcome == 'failure' | |
uses: codecov/codecov-action@v3 | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
files: ${{ github.workspace }}/build/coverage_report.xml | |
root_dir: ${{ github.workspace }}/raptor |