Refactor selection of Myers' bitparallel edit distance algorithm. (#3… #54
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| # SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin | |
| # SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik | |
| # SPDX-License-Identifier: CC0-1.0 | |
| name: Deploy documentation (https://docs.seqan.de/) | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| # Enables a manual trigger, may run on any branch | |
| workflow_dispatch: | |
| concurrency: | |
| group: docs-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: false | |
| env: | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -Eexuo pipefail {0} | |
| jobs: | |
| deploy_documentation: | |
| name: Deploy Documentation | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 30 | |
| if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Install CMake | |
| uses: seqan/actions/setup-cmake@main | |
| with: | |
| cmake: 3.16.9 | |
| - name: Install Doxygen | |
| uses: seqan/actions/setup-doxygen@main | |
| with: | |
| doxygen: 1.9.8 | |
| - name: Load cached documentation | |
| uses: actions/cache@v4 | |
| with: | |
| path: doc-build | |
| key: ${{ runner.os }}-documentation-1.9.8 | |
| - name: Build documentation | |
| run: | | |
| mkdir -p doc-build | |
| cd doc-build | |
| cmake ../test/documentation | |
| make -j2 download-cppreference-doxygen-web-tag | |
| ctest . -j2 --output-on-failure | |
| - name: Deploy User Documentation | |
| uses: Pendect/action-rsyncer@v2.0.0 | |
| env: | |
| DEPLOY_KEY: ${{ secrets.DEPLOY_HOST_SSH_KEY }} | |
| REMOTE_HOST: ${{ secrets.DEPLOY_HOST }} | |
| REMOTE_USER: ${{ secrets.REMOTE_USER }} | |
| TARGET: ${{ secrets.REMOTE_TARGET }} | |
| with: | |
| flags: '-zr --delete --timeout=60 --omit-dir-times' | |
| src: 'doc-build/doc_usr/html/' | |
| dest: '$REMOTE_USER@$REMOTE_HOST:$TARGET/main_user' | |
| - name: Deploy Developer Documentation | |
| uses: Pendect/action-rsyncer@v2.0.0 | |
| env: | |
| DEPLOY_KEY: ${{ secrets.DEPLOY_HOST_SSH_KEY }} | |
| REMOTE_HOST: ${{ secrets.DEPLOY_HOST }} | |
| REMOTE_USER: ${{ secrets.REMOTE_USER }} | |
| TARGET: ${{ secrets.REMOTE_TARGET }} | |
| with: | |
| flags: '-zr --delete --timeout=60 --omit-dir-times' | |
| src: 'doc-build/doc_dev/html/' | |
| dest: '$REMOTE_USER@$REMOTE_HOST:$TARGET/main_dev' |