[FIX] reorder of includes

Co-authored-by: Marcel <marehr@users.noreply.github.com>
seqan · Feb 14, 2021 · 08d176b · 08d176b
1 parent fccb332
commit 08d176b
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Showing 26 changed files with 38 additions and 33 deletions.
diff --git a/include/seqan3/alignment/matrix/alignment_optimum.hpp b/include/seqan3/alignment/matrix/alignment_optimum.hpp
@@ -16,8 +16,8 @@
 #include <type_traits>
 
 #include <seqan3/alignment/matrix/detail/matrix_coordinate.hpp>
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/core/detail/template_inspection.hpp>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/utility/simd/algorithm.hpp>
 #include <seqan3/utility/simd/concept.hpp>
 #include <seqan3/utility/simd/simd_traits.hpp>

diff --git a/include/seqan3/alignment/matrix/detail/affine_cell_proxy.hpp b/include/seqan3/alignment/matrix/detail/affine_cell_proxy.hpp
@@ -17,8 +17,8 @@
 #include <type_traits>
 
 #include <seqan3/alignment/matrix/trace_directions.hpp>
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/core/detail/empty_type.hpp>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/utility/simd/concept.hpp>
 #include <seqan3/utility/tuple_utility.hpp>
 

diff --git a/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_base.hpp b/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_base.hpp
@@ -16,8 +16,8 @@
 #include <utility>
 #include <vector>
 
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/range/container/aligned_allocator.hpp>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/utility/simd/concept.hpp>
 
 namespace seqan3::detail

diff --git a/include/seqan3/alignment/matrix/detail/combined_score_and_trace_matrix.hpp b/include/seqan3/alignment/matrix/detail/combined_score_and_trace_matrix.hpp
@@ -16,9 +16,9 @@
 
 #include <seqan3/alignment/matrix/detail/affine_cell_proxy.hpp>
 #include <seqan3/alignment/matrix/detail/matrix_coordinate.hpp>
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/core/range/type_traits.hpp>
 #include <seqan3/range/views/zip.hpp>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 
 namespace seqan3::detail
 {

diff --git a/include/seqan3/alignment/matrix/detail/matrix_coordinate.hpp b/include/seqan3/alignment/matrix/detail/matrix_coordinate.hpp
@@ -15,8 +15,8 @@
 #include <seqan3/std/concepts>
 #include <type_traits>
 
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/core/detail/strong_type.hpp>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/utility/simd/algorithm.hpp>
 #include <seqan3/utility/simd/concept.hpp>
 

diff --git a/include/seqan3/alignment/matrix/detail/score_matrix_single_column.hpp b/include/seqan3/alignment/matrix/detail/score_matrix_single_column.hpp
@@ -17,10 +17,10 @@
 
 #include <seqan3/alignment/matrix/detail/affine_cell_proxy.hpp>
 #include <seqan3/alignment/matrix/detail/matrix_coordinate.hpp>
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/range/container/aligned_allocator.hpp>
 #include <seqan3/range/views/repeat_n.hpp>
 #include <seqan3/range/views/zip.hpp>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/utility/simd/concept.hpp>
 
 namespace seqan3::detail

diff --git a/include/seqan3/alignment/matrix/detail/trace_matrix_full.hpp b/include/seqan3/alignment/matrix/detail/trace_matrix_full.hpp
@@ -20,11 +20,11 @@
 #include <seqan3/alignment/matrix/detail/trace_iterator.hpp>
 #include <seqan3/alignment/matrix/detail/two_dimensional_matrix.hpp>
 #include <seqan3/alignment/matrix/trace_directions.hpp>
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/core/detail/template_inspection.hpp>
 #include <seqan3/range/container/aligned_allocator.hpp>
 #include <seqan3/range/views/repeat_n.hpp>
 #include <seqan3/range/views/zip.hpp>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 
 namespace seqan3::detail
 {

diff --git a/include/seqan3/alignment/pairwise/policy/simd_affine_gap_policy.hpp b/include/seqan3/alignment/pairwise/policy/simd_affine_gap_policy.hpp
@@ -19,8 +19,8 @@
 #include <seqan3/alignment/matrix/alignment_optimum.hpp>
 #include <seqan3/alignment/matrix/trace_directions.hpp>
 #include <seqan3/alignment/pairwise/detail/alignment_algorithm_state.hpp>
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/core/configuration/configuration.hpp>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/utility/simd/algorithm.hpp>
 #include <seqan3/utility/simd/concept.hpp>
 #include <seqan3/utility/simd/simd_traits.hpp>

diff --git a/include/seqan3/alignment/scoring/gap_scheme.hpp b/include/seqan3/alignment/scoring/gap_scheme.hpp
@@ -12,12 +12,12 @@
 
 #pragma once
 
+#include <seqan3/std/concepts>
 #include <stdexcept>
 
 #include <seqan3/core/concept/cereal.hpp>
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/core/detail/strong_type.hpp>
-#include <seqan3/std/concepts>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 
 namespace seqan3
 {

diff --git a/include/seqan3/alignment/scoring/scoring_scheme_base.hpp b/include/seqan3/alignment/scoring/scoring_scheme_base.hpp
@@ -17,8 +17,8 @@
 
 #include <seqan3/alphabet/concept.hpp>
 #include <seqan3/core/concept/cereal.hpp>
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/core/detail/strong_type.hpp>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 
 #if SEQAN3_WITH_CEREAL
 #include <cereal/types/array.hpp>

diff --git a/include/seqan3/alphabet/concept.hpp b/include/seqan3/alphabet/concept.hpp
@@ -16,8 +16,8 @@
 
 #include <seqan3/alphabet/exception.hpp>
 #include <seqan3/core/concept/cereal.hpp>
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/core/detail/customisation_point.hpp>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/utility/detail/type_name_as_string.hpp>
 #include <seqan3/utility/type_traits/basic.hpp>
 

diff --git a/include/seqan3/alphabet/detail/alphabet_proxy.hpp b/include/seqan3/alphabet/detail/alphabet_proxy.hpp
@@ -17,8 +17,8 @@
 #include <seqan3/alphabet/alphabet_base.hpp>
 #include <seqan3/alphabet/nucleotide/concept.hpp>
 #include <seqan3/alphabet/quality/concept.hpp>
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/core/detail/template_inspection.hpp>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/utility/type_traits/basic.hpp>
 
 namespace seqan3

diff --git a/include/seqan3/argument_parser/validators.hpp b/include/seqan3/argument_parser/validators.hpp
@@ -21,13 +21,13 @@
 #include <sstream>
 
 #include <seqan3/argument_parser/exceptions.hpp>
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/core/debug_stream/detail/to_string.hpp>
 #include <seqan3/core/detail/debug_stream_range.hpp>
 #include <seqan3/io/detail/misc.hpp>
 #include <seqan3/io/detail/safe_filesystem_entry.hpp>
 #include <seqan3/range/container/concept.hpp>
 #include <seqan3/range/views/join.hpp>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/utility/type_list/traits.hpp>
 #include <seqan3/utility/type_pack/traits.hpp>
 #include <seqan3/utility/type_traits/basic.hpp>

diff --git a/include/seqan3/core/algorithm/bound.hpp b/include/seqan3/core/algorithm/bound.hpp
@@ -14,8 +14,8 @@
 
 #pragma once
 
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/core/detail/strong_type.hpp>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 
 SEQAN3_DEPRECATED_HEADER("This header is deprecated and will be removed in SeqAn-3.1.0. The contained functionality has been replaced by the seqan3::align_cfg::band_fixed_size configuration.")
 

diff --git a/include/seqan3/core/concept/core_language.hpp b/include/seqan3/core/concept/core_language.hpp
@@ -8,6 +8,8 @@
 /*!\file
  * \brief [DEPRECATED] Provides concepts for core language types and relations that don't have concepts in C++20 (yet).
  * \author Hannes Hauswedell <hannes.hauswedell AT fu-berlin.de>
+ * \deprecated This header will be removed in 3.1.0; Please \#include <seqan3/utility/detail/exposition_only_concept.hpp>
+ *             instead.
  */
 
 #pragma once

diff --git a/include/seqan3/io/alignment_file/format_sam.hpp b/include/seqan3/io/alignment_file/format_sam.hpp
@@ -20,7 +20,6 @@
 #include <vector>
 
 #include <seqan3/alphabet/concept.hpp>
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/core/debug_stream/detail/to_string.hpp>
 #include <seqan3/core/detail/template_inspection.hpp>
 #include <seqan3/core/range/type_traits.hpp>
@@ -43,9 +42,10 @@
 #include <seqan3/range/views/istreambuf.hpp>
 #include <seqan3/range/views/slice.hpp>
 #include <seqan3/range/views/take_until.hpp>
-#include <seqan3/range/views/to_char.hpp>
 #include <seqan3/range/views/to.hpp>
+#include <seqan3/range/views/to_char.hpp>
 #include <seqan3/utility/char_operations/predicate.hpp>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/utility/detail/type_name_as_string.hpp>
 #include <seqan3/utility/tuple/concept.hpp>
 

diff --git a/include/seqan3/io/alignment_file/format_sam_base.hpp b/include/seqan3/io/alignment_file/format_sam_base.hpp
@@ -20,7 +20,6 @@
 #include <string>
 #include <vector>
 
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/core/debug_stream/detail/to_string.hpp>
 #include <seqan3/core/detail/debug_stream_range.hpp>
 #include <seqan3/core/detail/template_inspection.hpp>
@@ -41,10 +40,11 @@
 #include <seqan3/range/views/repeat_n.hpp>
 #include <seqan3/range/views/slice.hpp>
 #include <seqan3/range/views/take_until.hpp>
-#include <seqan3/range/views/to_char.hpp>
 #include <seqan3/range/views/to.hpp>
+#include <seqan3/range/views/to_char.hpp>
 #include <seqan3/range/views/zip.hpp>
 #include <seqan3/utility/char_operations/predicate.hpp>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/utility/detail/type_name_as_string.hpp>
 #include <seqan3/utility/tuple/concept.hpp>
 

diff --git a/include/seqan3/io/alignment_file/sam_tag_dictionary.hpp b/include/seqan3/io/alignment_file/sam_tag_dictionary.hpp
@@ -16,9 +16,9 @@
 #include <map>
 #include <variant>
 
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/core/detail/template_inspection.hpp>
 #include <seqan3/range/container/small_string.hpp>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/utility/char_operations/predicate.hpp>
 
 namespace seqan3::detail

diff --git a/include/seqan3/io/detail/misc_input.hpp b/include/seqan3/io/detail/misc_input.hpp
@@ -12,11 +12,16 @@
 
 #pragma once
 
+#include <seqan3/std/algorithm>
+#include <seqan3/std/concepts>
+#include <seqan3/std/filesystem>
+#include <seqan3/std/ranges>
 #include <iostream>
+#include <seqan3/std/span>
 #include <string>
 #include <tuple>
 
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
+
 #ifdef SEQAN3_HAS_BZIP2
     #include <seqan3/contrib/stream/bz2_istream.hpp>
 #endif
@@ -26,11 +31,7 @@
     #include <seqan3/contrib/stream/gz_istream.hpp>
 #endif
 #include <seqan3/io/detail/magic_header.hpp>
-#include <seqan3/std/algorithm>
-#include <seqan3/std/concepts>
-#include <seqan3/std/filesystem>
-#include <seqan3/std/ranges>
-#include <seqan3/std/span>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 
 namespace seqan3::detail
 {

diff --git a/include/seqan3/range/views/convert.hpp b/include/seqan3/range/views/convert.hpp
@@ -12,10 +12,11 @@
 
 #pragma once
 
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/std/concepts>
 #include <seqan3/std/ranges>
 
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
+
 namespace seqan3::views
 {
 

diff --git a/include/seqan3/search/configuration/max_error_common.hpp b/include/seqan3/search/configuration/max_error_common.hpp
@@ -13,9 +13,10 @@
 
 #pragma once
 
+#include <seqan3/std/concepts>
+
 #include <seqan3/core/detail/strong_type.hpp>
 #include <seqan3/utility/detail/exposition_only_concept.hpp>
-#include <seqan3/std/concepts>
 
 namespace seqan3::search_cfg
 {

diff --git a/include/seqan3/utility/detail/exposition_only_concept.hpp b/include/seqan3/utility/detail/exposition_only_concept.hpp
@@ -12,10 +12,10 @@
 
 #pragma once
 
+#include <seqan3/std/concepts>
 #include <type_traits>
 
 #include <seqan3/core/platform.hpp>
-#include <seqan3/std/concepts>
 
 namespace seqan3::detail
 {

diff --git a/test/unit/alphabet/semi_alphabet_test_template.hpp b/test/unit/alphabet/semi_alphabet_test_template.hpp
@@ -9,9 +9,9 @@
 
 #include <seqan3/alphabet/concept.hpp>
 #include <seqan3/alphabet/exception.hpp>
-#include <seqan3/utility/detail/exposition_only_concept.hpp>
 #include <seqan3/core/detail/debug_stream_alphabet.hpp>
 #include <seqan3/test/pretty_printing.hpp>
+#include <seqan3/utility/detail/exposition_only_concept.hpp>
 
 template <typename T>
 using semi_alphabet_test = ::testing::Test;

diff --git a/test/unit/std/concept/comparison_test.cpp b/test/unit/std/concept/comparison_test.cpp
@@ -7,10 +7,10 @@
 
 #include <gtest/gtest.h>
 
+#include <seqan3/std/concepts>
 #include <random>
 
 #include <seqan3/utility/detail/exposition_only_concept.hpp>
-#include <seqan3/std/concepts>
 
 #include "auxiliary.hpp"
 

diff --git a/test/unit/std/concept/object_test.cpp b/test/unit/std/concept/object_test.cpp
@@ -7,10 +7,10 @@
 
 #include <gtest/gtest.h>
 
+#include <seqan3/std/concepts>
 #include <random>
 
 #include <seqan3/utility/detail/exposition_only_concept.hpp>
-#include <seqan3/std/concepts>
 
 #include "auxiliary.hpp"
 

diff --git a/test/unit/utility/detail/exposition_only_concept_test.cpp b/test/unit/utility/detail/exposition_only_concept_test.cpp
@@ -7,10 +7,10 @@
 
 #include <gtest/gtest.h>
 
+#include <seqan3/std/iterator>
 #include <random>
 
 #include <seqan3/utility/detail/exposition_only_concept.hpp>
-#include <seqan3/std/iterator>
 
 #include "../../std/concept/auxiliary.hpp"