Merge pull request #2125 from eseiler/misc/coverage

[MISC] Increase search coverage to 100%
seqan · Sep 22, 2020 · 205674c · 205674c
2 parents b26aef7 + 8b6c1b7
commit 205674c
Showing 1 changed file with 15 additions and 0 deletions.
diff --git a/test/unit/search/search_test.cpp b/test/unit/search/search_test.cpp
@@ -277,6 +277,11 @@ TYPED_TEST(search_test, error_levenshtein)
         EXPECT_RANGE_EQ(search("CCGT"_dna4, this->index, cfg) | position,
                         (std::vector{0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10}));
     }
+    {
+        seqan3::configuration const cfg = seqan3::search_cfg::max_error_total{seqan3::search_cfg::error_count{4}};
+        EXPECT_RANGE_EQ(search("CCGT"_dna4, this->index, cfg) | position,
+                        (std::vector{0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12}));
+    }
 }
 
 TYPED_TEST(search_test, error_indel_no_substitution)
@@ -408,6 +413,16 @@ TYPED_TEST(search_test, search_strategy_best)
         ASSERT_EQ(result.size(), 1u);
         EXPECT_TRUE(std::find(possible_hits2d.begin(), possible_hits2d.end(), result[0]) != possible_hits2d.end());
     }
+
+    {  // Find best match with at most 2 of every error type.
+        seqan3::configuration const cfg = seqan3::search_cfg::max_error_deletion{seqan3::search_cfg::error_count{2}} |
+                                          seqan3::search_cfg::max_error_insertion{seqan3::search_cfg::error_count{2}} |
+                                          seqan3::search_cfg::max_error_substitution{
+                                              seqan3::search_cfg::error_count{2}} |
+                                          seqan3::search_cfg::hit_single_best;
+
+        EXPECT_RANGE_EQ(search("TATTA"_dna4, this->index, cfg) | position, (std::vector{3}));
+    }
 }
 
 TYPED_TEST(search_test, search_strategy_all_best)