[WIP] core_language adapt header

seqan · Mar 28, 2022 · 32a56b7 · 32a56b7
1 parent bf00309
commit 32a56b7
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Showing 36 changed files with 34 additions and 36 deletions.
diff --git a/include/seqan3/alignment/configuration/align_config_output.hpp b/include/seqan3/alignment/configuration/align_config_output.hpp
@@ -15,7 +15,7 @@
 #include <seqan3/alignment/configuration/detail.hpp>
 #include <seqan3/alignment/pairwise/alignment_result.hpp>
 #include <seqan3/core/configuration/pipeable_config_element.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 
 namespace seqan3::align_cfg
 {

diff --git a/include/seqan3/alignment/configuration/align_config_score_type.hpp b/include/seqan3/alignment/configuration/align_config_score_type.hpp
@@ -14,7 +14,7 @@
 
 #include <seqan3/alignment/configuration/detail.hpp>
 #include <seqan3/core/configuration/pipeable_config_element.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 
 namespace seqan3::align_cfg
 {

diff --git a/include/seqan3/alignment/matrix/detail/affine_cell_proxy.hpp b/include/seqan3/alignment/matrix/detail/affine_cell_proxy.hpp
@@ -18,7 +18,7 @@
 
 #include <seqan3/alignment/matrix/detail/trace_directions.hpp>
 #include <seqan3/core/detail/empty_type.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 #include <seqan3/utility/simd/concept.hpp>
 #include <seqan3/utility/tuple/concept.hpp>
 

diff --git a/include/seqan3/alignment/matrix/detail/alignment_optimum.hpp b/include/seqan3/alignment/matrix/detail/alignment_optimum.hpp
@@ -17,7 +17,7 @@
 
 #include <seqan3/alignment/matrix/detail/matrix_coordinate.hpp>
 #include <seqan3/core/detail/template_inspection.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 #include <seqan3/utility/simd/algorithm.hpp>
 #include <seqan3/utility/simd/concept.hpp>
 #include <seqan3/utility/simd/simd_traits.hpp>

diff --git a/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column.hpp b/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column.hpp
@@ -19,7 +19,7 @@
 #include <seqan3/alignment/matrix/detail/alignment_matrix_column_major_range_base.hpp>
 #include <seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_base.hpp>
 #include <seqan3/alignment/matrix/detail/alignment_score_matrix_proxy.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 #include <seqan3/utility/simd/concept.hpp>
 
 namespace seqan3::detail

diff --git a/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_base.hpp b/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_base.hpp
@@ -17,7 +17,7 @@
 #include <vector>
 
 #include <seqan3/utility/container/aligned_allocator.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 #include <seqan3/utility/simd/concept.hpp>
 
 namespace seqan3::detail

diff --git a/include/seqan3/alignment/matrix/detail/alignment_score_matrix_proxy.hpp b/include/seqan3/alignment/matrix/detail/alignment_score_matrix_proxy.hpp
@@ -12,7 +12,7 @@
 
 #pragma once
 
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 #include <seqan3/utility/simd/concept.hpp>
 
 namespace seqan3::detail

diff --git a/include/seqan3/alignment/matrix/detail/combined_score_and_trace_matrix.hpp b/include/seqan3/alignment/matrix/detail/combined_score_and_trace_matrix.hpp
@@ -17,7 +17,7 @@
 #include <seqan3/alignment/matrix/detail/affine_cell_proxy.hpp>
 #include <seqan3/alignment/matrix/detail/matrix_coordinate.hpp>
 #include <seqan3/core/range/type_traits.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 #include <seqan3/utility/views/zip.hpp>
 
 namespace seqan3::detail

diff --git a/include/seqan3/alignment/matrix/detail/matrix_coordinate.hpp b/include/seqan3/alignment/matrix/detail/matrix_coordinate.hpp
@@ -16,7 +16,7 @@
 #include <type_traits>
 
 #include <seqan3/core/detail/strong_type.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 #include <seqan3/utility/simd/algorithm.hpp>
 #include <seqan3/utility/simd/concept.hpp>
 

diff --git a/include/seqan3/alignment/matrix/detail/score_matrix_single_column.hpp b/include/seqan3/alignment/matrix/detail/score_matrix_single_column.hpp
@@ -17,7 +17,7 @@
 
 #include <seqan3/alignment/matrix/detail/affine_cell_proxy.hpp>
 #include <seqan3/alignment/matrix/detail/matrix_coordinate.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 #include <seqan3/utility/container/aligned_allocator.hpp>
 #include <seqan3/utility/simd/concept.hpp>
 #include <seqan3/utility/views/repeat_n.hpp>

diff --git a/include/seqan3/alignment/matrix/detail/trace_matrix_full.hpp b/include/seqan3/alignment/matrix/detail/trace_matrix_full.hpp
@@ -21,7 +21,7 @@
 #include <seqan3/alignment/matrix/detail/trace_iterator.hpp>
 #include <seqan3/alignment/matrix/detail/two_dimensional_matrix.hpp>
 #include <seqan3/core/detail/template_inspection.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 #include <seqan3/utility/container/aligned_allocator.hpp>
 #include <seqan3/utility/views/repeat_n.hpp>
 #include <seqan3/utility/views/zip.hpp>

diff --git a/include/seqan3/alignment/pairwise/detail/alignment_algorithm_state.hpp b/include/seqan3/alignment/pairwise/detail/alignment_algorithm_state.hpp
@@ -13,7 +13,7 @@
 #pragma once
 
 #include <seqan3/alignment/matrix/detail/alignment_optimum.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 #include <seqan3/utility/simd/concept.hpp>
 
 namespace seqan3::detail

diff --git a/include/seqan3/alignment/pairwise/policy/affine_gap_policy.hpp b/include/seqan3/alignment/pairwise/policy/affine_gap_policy.hpp
@@ -15,7 +15,7 @@
 #include <seqan3/alignment/configuration/align_config_gap_cost_affine.hpp>
 #include <seqan3/alignment/matrix/detail/trace_directions.hpp>
 #include <seqan3/alignment/pairwise/detail/alignment_algorithm_state.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 
 namespace seqan3::detail
 {

diff --git a/include/seqan3/alignment/pairwise/policy/simd_affine_gap_policy.hpp b/include/seqan3/alignment/pairwise/policy/simd_affine_gap_policy.hpp
@@ -20,7 +20,7 @@
 #include <seqan3/alignment/matrix/detail/trace_directions.hpp>
 #include <seqan3/alignment/pairwise/detail/alignment_algorithm_state.hpp>
 #include <seqan3/core/configuration/configuration.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 #include <seqan3/utility/simd/algorithm.hpp>
 #include <seqan3/utility/simd/concept.hpp>
 #include <seqan3/utility/simd/simd_traits.hpp>

diff --git a/include/seqan3/alignment/scoring/scoring_scheme_base.hpp b/include/seqan3/alignment/scoring/scoring_scheme_base.hpp
@@ -18,7 +18,7 @@
 #include <seqan3/alphabet/concept.hpp>
 #include <seqan3/core/concept/cereal.hpp>
 #include <seqan3/core/detail/strong_type.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 
 #if SEQAN3_WITH_CEREAL
 #include <cereal/types/array.hpp>

diff --git a/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp b/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp
@@ -20,7 +20,6 @@
 #include <seqan3/alphabet/composite/detail.hpp>
 #include <seqan3/alphabet/concept.hpp>
 #include <seqan3/alphabet/detail/alphabet_proxy.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
 #include <seqan3/utility/detail/integer_traits.hpp>
 #include <seqan3/utility/tuple/concept.hpp>
 #include <seqan3/utility/type_list/detail/type_list_algorithm.hpp>

diff --git a/include/seqan3/alphabet/concept.hpp b/include/seqan3/alphabet/concept.hpp
@@ -17,7 +17,6 @@
 #include <seqan3/alphabet/exception.hpp>
 #include <seqan3/core/concept/cereal.hpp>
 #include <seqan3/core/detail/customisation_point.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
 #include <seqan3/utility/detail/type_name_as_string.hpp>
 #include <seqan3/utility/type_traits/basic.hpp>
 

diff --git a/include/seqan3/alphabet/detail/alphabet_proxy.hpp b/include/seqan3/alphabet/detail/alphabet_proxy.hpp
@@ -15,10 +15,11 @@
 #include <concepts>
 
 #include <seqan3/alphabet/alphabet_base.hpp>
+#include <seqan3/alphabet/detail/concept.hpp>
 #include <seqan3/alphabet/nucleotide/concept.hpp>
 #include <seqan3/alphabet/quality/concept.hpp>
 #include <seqan3/core/detail/template_inspection.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 #include <seqan3/utility/type_traits/basic.hpp>
 
 namespace seqan3

diff --git a/include/seqan3/argument_parser/validators.hpp b/include/seqan3/argument_parser/validators.hpp
@@ -25,7 +25,7 @@
 #include <seqan3/core/debug_stream/range.hpp>
 #include <seqan3/io/detail/misc.hpp>
 #include <seqan3/io/detail/safe_filesystem_entry.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 #include <seqan3/utility/type_list/traits.hpp>
 #include <seqan3/utility/type_pack/traits.hpp>
 #include <seqan3/utility/type_traits/basic.hpp>

diff --git a/include/seqan3/core/concept/all.hpp b/include/seqan3/core/concept/all.hpp
@@ -13,7 +13,7 @@
 #pragma once
 
 #include <seqan3/core/concept/cereal.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 #include <seqan3/utility/tuple/concept.hpp>
 
 /*!\defgroup core_concept Concept

diff --git a/include/seqan3/io/detail/misc_input.hpp b/include/seqan3/io/detail/misc_input.hpp
@@ -31,7 +31,7 @@
 #endif
 #include <seqan3/io/detail/magic_header.hpp>
 #include <seqan3/io/exception.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 
 namespace seqan3::detail
 {

diff --git a/include/seqan3/io/detail/misc_output.hpp b/include/seqan3/io/detail/misc_output.hpp
@@ -26,7 +26,7 @@
     #include <seqan3/contrib/stream/gz_ostream.hpp>
 #endif
 #include <seqan3/io/exception.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 
 namespace seqan3::detail
 {

diff --git a/include/seqan3/io/sam_file/sam_tag_dictionary.hpp b/include/seqan3/io/sam_file/sam_tag_dictionary.hpp
@@ -18,7 +18,6 @@
 
 #include <seqan3/core/detail/template_inspection.hpp>
 #include <seqan3/utility/char_operations/predicate.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
 #include <seqan3/utility/container/small_string.hpp>
 
 namespace seqan3::detail

diff --git a/include/seqan3/search/configuration/max_error_common.hpp b/include/seqan3/search/configuration/max_error_common.hpp
@@ -16,7 +16,7 @@
 #include <concepts>
 
 #include <seqan3/core/detail/strong_type.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 
 namespace seqan3::search_cfg
 {

diff --git a/include/seqan3/utility/char_operations/transform.hpp b/include/seqan3/utility/char_operations/transform.hpp
@@ -14,7 +14,7 @@
 
 #include <array>
 
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 #include <seqan3/utility/detail/integer_traits.hpp>
 
 namespace seqan3::detail

diff --git a/include/seqan3/utility/simd/views/iota_simd.hpp b/include/seqan3/utility/simd/views/iota_simd.hpp
@@ -14,7 +14,7 @@
 
 #include <seqan3/std/ranges>
 
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 #include <seqan3/utility/simd/algorithm.hpp>
 #include <seqan3/utility/simd/concept.hpp>
 #include <seqan3/utility/simd/simd_traits.hpp>

diff --git a/include/seqan3/utility/views/convert.hpp b/include/seqan3/utility/views/convert.hpp
@@ -15,7 +15,7 @@
 #include <concepts>
 #include <seqan3/std/ranges>
 
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 
 namespace seqan3::views
 {

diff --git a/...et/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_inherit.cpp.in b/...et/nucleotide/@target_alphabet@_implicit_conversion_from_@source_alphabet@_inherit.cpp.in
@@ -21,7 +21,7 @@ int main()
 }
 //![main]
 
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 
 static_assert(seqan3::implicitly_convertible_to<seqan3::${source_alphabet}, seqan3::${target_alphabet}>);
 static_assert(!seqan3::implicitly_convertible_to<seqan3::${source_alphabet}, my_${target_alphabet}>);

diff --git a/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15_inherit.cpp b/test/snippet/alphabet/nucleotide/dna15_implicit_conversion_from_rna15_inherit.cpp
@@ -21,7 +21,7 @@ int main()
 }
 //![main]
 
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 
 static_assert(seqan3::implicitly_convertible_to<seqan3::rna15, seqan3::dna15>);
 static_assert(!seqan3::implicitly_convertible_to<seqan3::rna15, my_dna15>);

diff --git a/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4_inherit.cpp b/test/snippet/alphabet/nucleotide/dna4_implicit_conversion_from_rna4_inherit.cpp
@@ -21,7 +21,7 @@ int main()
 }
 //![main]
 
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 
 static_assert(seqan3::implicitly_convertible_to<seqan3::rna4, seqan3::dna4>);
 static_assert(!seqan3::implicitly_convertible_to<seqan3::rna4, my_dna4>);

diff --git a/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5_inherit.cpp b/test/snippet/alphabet/nucleotide/dna5_implicit_conversion_from_rna5_inherit.cpp
@@ -21,7 +21,7 @@ int main()
 }
 //![main]
 
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 
 static_assert(seqan3::implicitly_convertible_to<seqan3::rna5, seqan3::dna5>);
 static_assert(!seqan3::implicitly_convertible_to<seqan3::rna5, my_dna5>);

diff --git a/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15_inherit.cpp b/test/snippet/alphabet/nucleotide/rna15_implicit_conversion_from_dna15_inherit.cpp
@@ -21,7 +21,7 @@ int main()
 }
 //![main]
 
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 
 static_assert(seqan3::implicitly_convertible_to<seqan3::dna15, seqan3::rna15>);
 static_assert(!seqan3::implicitly_convertible_to<seqan3::dna15, my_rna15>);

diff --git a/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4_inherit.cpp b/test/snippet/alphabet/nucleotide/rna4_implicit_conversion_from_dna4_inherit.cpp
@@ -21,7 +21,7 @@ int main()
 }
 //![main]
 
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 
 static_assert(seqan3::implicitly_convertible_to<seqan3::dna4, seqan3::rna4>);
 static_assert(!seqan3::implicitly_convertible_to<seqan3::dna4, my_rna4>);

diff --git a/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5_inherit.cpp b/test/snippet/alphabet/nucleotide/rna5_implicit_conversion_from_dna5_inherit.cpp
@@ -21,7 +21,7 @@ int main()
 }
 //![main]
 
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 
 static_assert(seqan3::implicitly_convertible_to<seqan3::dna5, seqan3::rna5>);
 static_assert(!seqan3::implicitly_convertible_to<seqan3::dna5, my_rna5>);

diff --git a/test/unit/alphabet/semi_alphabet_test_template.hpp b/test/unit/alphabet/semi_alphabet_test_template.hpp
@@ -11,7 +11,7 @@
 #include <seqan3/alphabet/detail/debug_stream_alphabet.hpp>
 #include <seqan3/alphabet/exception.hpp>
 #include <seqan3/test/pretty_printing.hpp>
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 
 template <typename T>
 using semi_alphabet_test = ::testing::Test;

diff --git a/test/unit/std/concept/object_test.cpp b/test/unit/std/concept/object_test.cpp
@@ -10,7 +10,7 @@
 #include <concepts>
 #include <random>
 
-#include <seqan3/utility/concept/exposition_only/core_language.hpp>
+#include <seqan3/utility/concept.hpp>
 
 #include "auxiliary.hpp"